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Sample GSM2825434 Query DataSets for GSM2825434
Status Public on Oct 20, 2017
Title ChIP-seq from RWPE1 (ENCLB807RBV)
Sample type SRA
 
Source name Homo sapiens RWPE1 immortalized cell line
Organism Homo sapiens
Characteristics antibody: H3K27ac
line: RWPE1
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS124FCL (SAMN07790810)
Sex: male
lab: Michael Snyder, Stanford
health state: normal
age: 54 year
dev stage: adult
link: ENCBS124FCL at ENCODE; https://www.encodeproject.org/ENCBS124FCL/
link: derived from ENCODE donor ENCDO000ADM; https://www.encodeproject.org/ENCDO000ADM/
link: growth protocol; https://www.encodeproject.org/documents/962eab51-1b90-46c2-88f8-c9aecacb2d3f/@@download/attachment/RWPE-1_Cell_Culture_Farnham_150923.pdf
Extracted molecule genomic DNA
Extraction protocol not provided
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 4000
 
Description https://www.encodeproject.org/experiments/ENCSR203KEU/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on human RWPE1
experiment encode accession: ENCSR203KEU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR248IFK
encode release date: 2017-03-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB807RBV
size range: 450-650
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 19, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL20301
Series (1)
GSE105290 ChIP-seq from RWPE1 (ENCSR203KEU)
Relations
BioSample SAMN07790810
SRA SRX3321943
Named Annotation GSM2825434_ENCFF153RIR_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2825434_ENCFF053MIK_fold_change_over_control_hg19.bigWig
Named Annotation GSM2825434_ENCFF821PLV_signal_p-value_hg19.bigWig
Named Annotation GSM2825434_ENCFF026WGW_signal_p-value_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2825434_ENCFF010CYH_peaks_hg19.bed.gz 2.4 Mb (ftp)(http) BED
GSM2825434_ENCFF026WGW_signal_p-value_GRCh38.bigWig 1.2 Gb (ftp)(http) BIGWIG
GSM2825434_ENCFF053MIK_fold_change_over_control_hg19.bigWig 1.8 Gb (ftp)(http) BIGWIG
GSM2825434_ENCFF153RIR_fold_change_over_control_GRCh38.bigWig 1.8 Gb (ftp)(http) BIGWIG
GSM2825434_ENCFF347HPA_peaks_hg19.bigBed 5.3 Mb (ftp)(http) BIGBED
GSM2825434_ENCFF702SHR_peaks_GRCh38.bigBed 5.4 Mb (ftp)(http) BIGBED
GSM2825434_ENCFF722FVT_peaks_GRCh38.bed.gz 2.4 Mb (ftp)(http) BED
GSM2825434_ENCFF821PLV_signal_p-value_hg19.bigWig 1.0 Gb (ftp)(http) BIGWIG
GSM2825434_ENCLB807RBV_README.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
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