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Sample GSM2824379 Query DataSets for GSM2824379
Status Public on Oct 20, 2017
Title ChIP-seq from omental fat pad (ENCLB151YDR)
Sample type SRA
 
Source name Homo sapiens omental fat pad tissue male adult (54 years)
Organism Homo sapiens
Characteristics antibody: EP300
tissue_type: omental fat pad
biomaterial_type: tissue
biosample encode accession: ENCBS549WYP (SAMN07791065)
Sex: male
lab: Richard Myers, HAIB
age: 54 year
donor_id: ENCDO451RUA
dev stage: adult
link: ENCBS549WYP at ENCODE; https://www.encodeproject.org/ENCBS549WYP/
link: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/
link: data sheet; https://www.encodeproject.org/documents/f1bc1a32-57c3-4eb7-a440-550aef6be681/@@download/attachment/image%20to%20tissue%20mapping%20public.pdf
link: high resolution pathology slide image; https://www.encodeproject.org/documents/6fc7fb1a-fb8d-40a9-9e2d-88c59605f3f9/@@download/attachment/82362.svs
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR047DRF/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on adipose tissue of omentum
experiment encode accession: ENCSR047DRF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR377VHO
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB151YDR
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 19, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE105201 ChIP-seq from omental fat pad (ENCSR047DRF)
Relations
BioSample SAMN07791065
SRA SRX3322140
Named Annotation GSM2824379_ENCFF248YXA_fold_change_over_control_hg19.bigWig
Named Annotation GSM2824379_ENCFF189NYU_signal_p-value_hg19.bigWig
Named Annotation GSM2824379_ENCFF830DPZ_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2824379_ENCFF537FYP_signal_p-value_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2824379_ENCFF058NDV_pseudoreplicated_idr_thresholded_peaks_hg19.bigBed 15.4 Kb (ftp)(http) BIGBED
GSM2824379_ENCFF099GES_peaks_hg19.bed.gz 4.0 Mb (ftp)(http) BED
GSM2824379_ENCFF109RUD_peaks_hg19.bigBed 6.9 Mb (ftp)(http) BIGBED
GSM2824379_ENCFF189NYU_signal_p-value_hg19.bigWig 1.4 Gb (ftp)(http) BIGWIG
GSM2824379_ENCFF248YXA_fold_change_over_control_hg19.bigWig 1.4 Gb (ftp)(http) BIGWIG
GSM2824379_ENCFF282FFQ_pseudoreplicated_idr_thresholded_peaks_GRCh38.bigBed 67.7 Kb (ftp)(http) BIGBED
GSM2824379_ENCFF293JGY_peaks_GRCh38.bigBed 6.9 Mb (ftp)(http) BIGBED
GSM2824379_ENCFF459MDC_pseudoreplicated_idr_thresholded_peaks_hg19.bed.gz 640 b (ftp)(http) BED
GSM2824379_ENCFF537FYP_signal_p-value_GRCh38.bigWig 1.4 Gb (ftp)(http) BIGWIG
GSM2824379_ENCFF543DBA_peaks_GRCh38.bed.gz 4.1 Mb (ftp)(http) BED
GSM2824379_ENCFF830DPZ_fold_change_over_control_GRCh38.bigWig 1.4 Gb (ftp)(http) BIGWIG
GSM2824379_ENCFF895RTD_pseudoreplicated_idr_thresholded_peaks_GRCh38.bed.gz 919 b (ftp)(http) BED
GSM2824379_ENCLB151YDR_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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