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Sample GSM2824368 Query DataSets for GSM2824368
Status Public on Oct 20, 2017
Title ChIP-seq from testis (ENCLB957YZF)
Sample type SRA
 
Source name Homo sapiens testis tissue male adult (37 years)
Organism Homo sapiens
Characteristics antibody: EP300
tissue_type: testis
biomaterial_type: tissue
biosample encode accession: ENCBS538CDU (SAMN07791051)
Sex: male
lab: Richard Myers, HAIB
age: 37 year
donor_id: ENCDO845WKR
dev stage: adult
link: ENCBS538CDU at ENCODE; https://www.encodeproject.org/ENCBS538CDU/
link: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/
link: general protocol; https://www.encodeproject.org/documents/a3ee0bcf-48e3-4173-a23e-28a370090f00/@@download/attachment/ENCDO845WKR_collection_times.pdf
link: data sheet; https://www.encodeproject.org/documents/c530ba5c-4343-49bc-898b-5579c287a67e/@@download/attachment/image%20to%20tissue%20mapping%20public.pdf
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR046INL/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on testis
experiment encode accession: ENCSR046INL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR666SXC
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB957YZF
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 19, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE105195 ChIP-seq from testis (ENCSR046INL)
Relations
BioSample SAMN07791051
SRA SRX3322066
Named Annotation GSM2824368_ENCFF329YTM_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2824368_ENCFF768QNP_signal_p-value_GRCh38.bigWig
Named Annotation GSM2824368_ENCFF200ZMM_signal_p-value_hg19.bigWig
Named Annotation GSM2824368_ENCFF774YJG_fold_change_over_control_hg19.bigWig

Supplementary file Size Download File type/resource
GSM2824368_ENCFF046VTZ_pseudoreplicated_idr_thresholded_peaks_GRCh38.bed.gz 752 b (ftp)(http) BED
GSM2824368_ENCFF200ZMM_signal_p-value_hg19.bigWig 1.3 Gb (ftp)(http) BIGWIG
GSM2824368_ENCFF255NOE_pseudoreplicated_idr_thresholded_peaks_hg19.bigBed 14.9 Kb (ftp)(http) BIGBED
GSM2824368_ENCFF329YTM_fold_change_over_control_GRCh38.bigWig 1.1 Gb (ftp)(http) BIGWIG
GSM2824368_ENCFF426BJU_pseudoreplicated_idr_thresholded_peaks_hg19.bed.gz 456 b (ftp)(http) BED
GSM2824368_ENCFF458VJY_pseudoreplicated_idr_thresholded_peaks_GRCh38.bigBed 16.1 Kb (ftp)(http) BIGBED
GSM2824368_ENCFF516KJT_peaks_GRCh38.bed.gz 4.9 Mb (ftp)(http) BED
GSM2824368_ENCFF695AMM_peaks_hg19.bigBed 10.9 Mb (ftp)(http) BIGBED
GSM2824368_ENCFF745GHM_peaks_hg19.bed.gz 4.9 Mb (ftp)(http) BED
GSM2824368_ENCFF768QNP_signal_p-value_GRCh38.bigWig 1.1 Gb (ftp)(http) BIGWIG
GSM2824368_ENCFF774YJG_fold_change_over_control_hg19.bigWig 1.1 Gb (ftp)(http) BIGWIG
GSM2824368_ENCFF835FOG_peaks_GRCh38.bigBed 11.0 Mb (ftp)(http) BIGBED
GSM2824368_ENCLB957YZF_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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