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Sample GSM278846 Query DataSets for GSM278846
Status Public on Apr 02, 2009
Title WuYun3-RSV infected, biological rep3
Sample type RNA
Source name Tissue: aerial parts
Organism Oryza sativa
Characteristics Age: 32th day after germination
Treatment protocol Untreated
Growth protocol RSV-innoculated or non-innoculated WuYun3 or KT95-418 rice plants were grown in greenhouse at 25±3C with a daily photoperiodic cycle of 16 hours light and 8 hours.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol 5 ug total RNA.
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45 degree celsius on GeneChip Rice Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using GeneChip Scanner 3000
Description Gene expression data from RSV-innoculated WuYun3
Data processing GCOS1.0
Submission date Apr 02, 2008
Last update date Apr 04, 2008
Contact name Xiaoting Zhang
Phone 86-591-83769714
Organization name Fujian Agriculture and Forestry University
Department Plant Protection Department
Lab Plant Virology Institute
Street address Jinshan
City Fuzhou
State/province Fujian
ZIP/Postal code 350002
Country China
Platform ID GPL2025
Series (1)
GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection

Data table header descriptions
VALUE GCOS1.0-calculated signal intensity

Data table
AFFX-BioB-5_at 577.2 P 0.000147
AFFX-BioB-M_at 656.6 P 0.00007
AFFX-BioB-3_at 555.8 P 0.000044
AFFX-BioC-5_at 1360.4 P 0.000044
AFFX-BioC-3_at 1425.8 P 0.000044
AFFX-BioDn-5_at 2865.4 P 0.000044
AFFX-BioDn-3_at 8316.4 P 0.000044
AFFX-CreX-5_at 20314.4 P 0.000044
AFFX-CreX-3_at 25779.5 P 0.000044
AFFX-DapX-5_at 1957.3 P 0.000044
AFFX-DapX-M_at 5259 P 0.000052
AFFX-DapX-3_at 12405.9 P 0.000044
AFFX-LysX-5_at 614.1 P 0.000044
AFFX-LysX-M_at 871.1 P 0.000044
AFFX-LysX-3_at 1960.4 P 0.00006
AFFX-PheX-5_at 1017.9 P 0.000044
AFFX-PheX-M_at 1151.9 P 0.000052
AFFX-PheX-3_at 1499.7 P 0.000044
AFFX-ThrX-5_at 800.4 P 0.00007
AFFX-ThrX-M_at 1659.1 P 0.000044

Total number of rows: 57381

Table truncated, full table size 1955 Kbytes.

Supplementary file Size Download File type/resource
GSM278846.CEL.gz 4.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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