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Sample GSM2785715

Query DataSets for GSM2785715

Status

Public on Jan 01, 2018

Title

P7731 [genotype]

Sample type

genomic

Source name

Cell line

Organism

Characteristics

sample type: Cell line derived from metastasis

Growth protocol

P7731 cells were maintained in RPMI1640 + 10% FBS.

Extracted molecule

genomic DNA

Extraction protocol

DNA from the primary tumour and cell line were extracted using the salting-out method followed by a phenol-chloroform extraction.

Label

cy3, cy6

Label protocol

Whole genome amplification was performed using the Infinium II assay protocol (Illumina).

Hybridization protocol

Standard Illumina protocol

Scan protocol

Standard Illumina protocol

Description

Cell Line_430274362_B

Data processing

Regions of copy number aberrations (CNAs) were identified using the genoCN software, which simultaneously describes copy number states and genotype calls whilst controlling for tissue contamination.

Submission date

Sep 15, 2017

Last update date

Jan 23, 2018

Contact name

Fares Al-Ejeh

E-mail(s)

Fares.Al-Ejeh@qimrberghofer.edu.au

Phone

61 7 3845 3675

Organization name

QIMR Berghofer

Department

Cancer

Lab

Personalized Medicine

Street address

300 Herston Road

City

Herston

State/province

QLD

ZIP/Postal code

4000

Country

Australia

Platform ID

Series (2)

GSE103896	Characterization of a novel breast cancer cell line derived from a metastatic bone lesion of a breast cancer patient [Genotype]
GSE103897	Characterization of a novel breast cancer cell line derived from a metastatic bone lesion of a breast cancer patient

Data table header descriptions
ID_REF
VALUE	GC Score
Theta
R
B Allele Freq
Log R Ratio

Data table
ID_REF	VALUE	Theta	R	B Allele Freq	Log R Ratio
rs10000010-126_B_F_IFB1153208421:0	0.9369	0.610	0.921	0.5386	-0.1662
rs10000023-126_B_F_IFB1153358872:0	0.8234	0.526	2.102	0.5302	-0.2127
rs10000030-120_B_R_IFB1137703207:0	0.8159	0.763	0.650	0.4906	0.0493
rs1000007-123_T_F_IFB1152225452:0	0.8748	0.014	0.870	0.0049	-0.0064
rs10000092-123_T_R_IFB1153358875:0	0.9265	0.565	0.741	0.5673	0.0225
rs10000121-126_B_R_IFB1136471760:0	0.8919	0.978	0.526	0.9898	-0.2489
rs1000014-126_B_R_IFB1136184019:0	0.7254	0.958	1.456	0.9916	0.0358
rs10000141-126_T_F_IFB1137734411:0	0.8891	0.992	0.966	1.0000	0.0698
rs1000016-126_B_R_IFB1156563530:0	0.8759	0.010	1.510	0.0090	-0.2355
rs10000169-119_T_R_IFB1135612081:0	0.8704	0.010	1.060	0.0028	0.0804
rs1000022-126_B_F_IFB1135126284:0	0.8798	0.592	0.943	0.4661	0.1169
rs10000272-126_T_R_IFB1136539894:0	0.8435	0.009	1.427	0.0076	-0.4048
rs10000282-121_T_R_IFB1136743500:0	0.8184	0.991	0.980	1.0000	-0.2908
rs10000300-126_T_R_IFB1152704058:0	0.8601	0.980	0.598	1.0000	-0.2419
rs1000031-123_B_F_IFB1135583872:0	0.8717	0.987	1.576	0.9987	0.0517
rs1000032-126_B_R_IFB1136145093:0	0.3845	0.990	1.207	1.0000	0.0901
rs10000388-126_B_F_IFB1135932472:0	0.9530	0.493	1.557	0.4751	0.1531
rs1000040-126_T_F_IFB1152704061:0	0.8484	0.984	0.839	0.9992	-0.1373
rs1000041-126_T_F_IFB1153889147:0	0.8351	0.972	1.192	0.9901	-0.2440
rs10000432-126_T_R_IFB1135756304:0	0.8545	0.980	0.640	1.0000	-0.3243

Total number of rows: 370404

Table truncated, full table size 24506 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM2785715_4302743262_B_Grn.idat.gz	2.1 Mb	(ftp)(http)	IDAT
GSM2785715_4302743262_B_Red.idat.gz	2.0 Mb	(ftp)(http)	IDAT
GSM2785715_Cell_Line_430274362_B.txt.gz	15.8 Mb	(ftp)(http)	TXT
Processed data included within Sample table
Processed data provided as supplementary file

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