|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Dec 01, 2008 |
Title |
Replicate 1 for BT474 cell line |
Sample type |
RNA |
|
|
Source name |
Human cell line
|
Organism |
Homo sapiens |
Characteristics |
No treatment. See ATCC/DSMZ for cell line details.
|
Extracted molecule |
total RNA |
Extraction protocol |
Affymetrix standard protocols. See Clin Cancer Res 2005;11(24) December 15, 2005
|
Label |
Biotin
|
Label protocol |
Affymetrix standard protocols. See Clin Cancer Res 2005;11(24) December 15, 2005
|
|
|
Hybridization protocol |
Affymetrix standard protocols. See Clin Cancer Res 2005;11(24) December 15, 2005
|
Scan protocol |
Affymetrix standard protocols. See Clin Cancer Res 2005;11(24) December 15, 2005
|
Description |
Cell line, RPMI1640, 10 %FBS, 2mM L-glutamine, 10mM HEPES
|
Data processing |
gcRMA (justGCRMA in R/Bioconductor)
|
|
|
Submission date |
Mar 14, 2008 |
Last update date |
Mar 19, 2008 |
Contact name |
Alex T. Adai |
E-mail(s) |
adai.alex@gene.com
|
Organization name |
Genentech
|
Department |
Oncology Diagnostics
|
Lab |
David Dornan
|
Street address |
X
|
City |
X |
State/province |
X |
ZIP/Postal code |
X |
Country |
USA |
|
|
Platform ID |
GPL570 |
Series (1) |
|
Data table header descriptions |
ID_REF |
Affymetrix probeset id |
VALUE |
Log base 2 of signal intensity (gcRMA normalized) |
Data table |
ID_REF |
VALUE |
1007_s_at |
10.7942381307534 |
1053_at |
10.1769666952048 |
117_at |
2.70818891199765 |
121_at |
5.21841123372659 |
1255_g_at |
2.00677412297206 |
1294_at |
2.11891693356467 |
1316_at |
2.64967507272330 |
1320_at |
2.65998307112730 |
1405_i_at |
3.49878134097858 |
1431_at |
3.00919675804506 |
1438_at |
8.32885103679925 |
1487_at |
9.213228536065 |
1494_f_at |
2.38714676212005 |
1552256_a_at |
7.65213049968113 |
1552257_a_at |
10.1231995392907 |
1552258_at |
2.51998174385922 |
1552261_at |
2.71932353170752 |
1552263_at |
4.07943226225309 |
1552264_a_at |
8.6622526783405 |
1552266_at |
2.91973057844254 |
Total number of rows: 54675
Table truncated, full table size 1480 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM274657.cel.gz |
5.0 Mb |
(ftp)(http) |
CEL |
Processed data included within Sample table |
|
|
|
|
|