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Sample GSM2733393 Query DataSets for GSM2733393
Status Public on May 22, 2019
Title BAT KO
Sample type RNA
 
Source name 2-month-old Kdm4b KO mice
Organism Mus musculus
Characteristics tissue: brown fat
gender: male
genotype: Kdm4b KO
age: 2 months
Treatment protocol mice were fasted for 6 hours before collecting samples
Growth protocol mice were growth at room temperature and feed with chow diet
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol done by Technology Center for Genomics & Bioinformatics (TCGB) of UCLA
 
Hybridization protocol done by Technology Center for Genomics & Bioinformatics (TCGB) of UCLA
Scan protocol done by Technology Center for Genomics & Bioinformatics (TCGB) of UCLA
Data processing Quality control and a gene level MAS5 normalization were performed with the Affymetrix Expression Console software (Affymetrix version 1.3)
 
Submission date Aug 04, 2017
Last update date May 22, 2019
Contact name Cunyu Wang
E-mail(s) cunywang@ucla.edu
Phone 3108256317
Organization name university of California, Los Angeles
Department School of Dentistry
Lab CHS 56-200
Street address 10833 Le Conte Ave
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL1261
Series (2)
GSE102289 KDM4B epigenetically protects against obesity and metabolic dysfunction [gene expression]
GSE102290 KDM4B epigenetically protects against obesity and metabolic dysfunction

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 929.965 P 5.16732e-05
AFFX-BioB-M_at 1525.36 P 4.42873e-05
AFFX-BioB-3_at 814.998 P 4.42873e-05
AFFX-BioC-5_at 2276.52 P 5.16732e-05
AFFX-BioC-3_at 2570.28 P 5.16732e-05
AFFX-BioDn-5_at 6207.27 P 4.42873e-05
AFFX-BioDn-3_at 11326.4 P 5.16732e-05
AFFX-CreX-5_at 34120.9 P 5.16732e-05
AFFX-CreX-3_at 33719.8 P 4.42873e-05
AFFX-DapX-5_at 10.8822 A 0.659352
AFFX-DapX-M_at 48.9177 A 0.262827
AFFX-DapX-3_at 28.0287 A 0.250777
AFFX-LysX-5_at 3.67331 A 0.712274
AFFX-LysX-M_at 14.653 A 0.712257
AFFX-LysX-3_at 13.1648 A 0.58862
AFFX-PheX-5_at 4.4659 A 0.9273
AFFX-PheX-M_at 3.01486 A 0.910522
AFFX-PheX-3_at 16.8507 A 0.354453
AFFX-ThrX-5_at 7.4636 A 0.673061
AFFX-ThrX-M_at 3.10094 A 0.814869

Total number of rows: 45101

Table truncated, full table size 1375 Kbytes.




Supplementary file Size Download File type/resource
GSM2733393_BAT_KO.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM2733393_BAT_KO.mas5.CHP.gz 399.4 Kb (ftp)(http) CHP
Processed data included within Sample table

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