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Sample GSM2733391 Query DataSets for GSM2733391
Status Public on May 22, 2019
Title SubQ KO
Sample type RNA
 
Source name 2-month-old Kdm4b KO mice
Organism Mus musculus
Characteristics tissue: subcutaneous fat
gender: male
genotype: Kdm4b KO
age: 2 months
Treatment protocol mice were fasted for 6 hours before collecting samples
Growth protocol mice were growth at room temperature and feed with chow diet
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol done by Technology Center for Genomics & Bioinformatics (TCGB) of UCLA
 
Hybridization protocol done by Technology Center for Genomics & Bioinformatics (TCGB) of UCLA
Scan protocol done by Technology Center for Genomics & Bioinformatics (TCGB) of UCLA
Data processing Quality control and a gene level MAS5 normalization were performed with the Affymetrix Expression Console software (Affymetrix version 1.3)
 
Submission date Aug 04, 2017
Last update date May 22, 2019
Contact name Cunyu Wang
E-mail(s) cunywang@ucla.edu
Phone 3108256317
Organization name university of California, Los Angeles
Department School of Dentistry
Lab CHS 56-200
Street address 10833 Le Conte Ave
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL1261
Series (2)
GSE102289 KDM4B epigenetically protects against obesity and metabolic dysfunction [gene expression]
GSE102290 KDM4B epigenetically protects against obesity and metabolic dysfunction

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 623.411 P 6.02111e-05
AFFX-BioB-M_at 992.948 P 4.42873e-05
AFFX-BioB-3_at 561.181 P 5.16732e-05
AFFX-BioC-5_at 1488.41 P 5.16732e-05
AFFX-BioC-3_at 1890.43 P 5.16732e-05
AFFX-BioDn-5_at 4162.39 P 4.42873e-05
AFFX-BioDn-3_at 7238.27 P 7.00668e-05
AFFX-CreX-5_at 22256.5 P 5.16732e-05
AFFX-CreX-3_at 22014.5 P 4.42873e-05
AFFX-DapX-5_at 16.5266 A 0.102145
AFFX-DapX-M_at 33.9001 A 0.139482
AFFX-DapX-3_at 4.10057 A 0.712257
AFFX-LysX-5_at 1.57418 A 0.891041
AFFX-LysX-M_at 2.92501 A 0.834139
AFFX-LysX-3_at 22.8721 P 0.0336773
AFFX-PheX-5_at 1.48911 A 0.987453
AFFX-PheX-M_at 2.89025 A 0.941572
AFFX-PheX-3_at 14.6444 A 0.440636
AFFX-ThrX-5_at 29.1994 P 0.0200219
AFFX-ThrX-M_at 17.1576 A 0.544587

Total number of rows: 45101

Table truncated, full table size 1385 Kbytes.




Supplementary file Size Download File type/resource
GSM2733391_SubQ_KO.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM2733391_SubQ_KO.mas5.CHP.gz 395.1 Kb (ftp)(http) CHP
Processed data included within Sample table

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