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Sample GSM2733390 Query DataSets for GSM2733390
Status Public on May 22, 2019
Title SubQ WT
Sample type RNA
 
Source name 2-month-old Kdm4b WT mice
Organism Mus musculus
Characteristics tissue: subcutaneous fat
gender: male
genotype: wildtype
age: 2 months
Treatment protocol mice were fasted for 6 hours before collecting samples
Growth protocol mice were growth at room temperature and feed with chow diet
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol done by Technology Center for Genomics & Bioinformatics (TCGB) of UCLA
 
Hybridization protocol done by Technology Center for Genomics & Bioinformatics (TCGB) of UCLA
Scan protocol done by Technology Center for Genomics & Bioinformatics (TCGB) of UCLA
Data processing Quality control and a gene level MAS5 normalization were performed with the Affymetrix Expression Console software (Affymetrix version 1.3)
 
Submission date Aug 04, 2017
Last update date May 22, 2019
Contact name Cunyu Wang
E-mail(s) cunywang@ucla.edu
Phone 3108256317
Organization name university of California, Los Angeles
Department School of Dentistry
Lab CHS 56-200
Street address 10833 Le Conte Ave
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL1261
Series (2)
GSE102289 KDM4B epigenetically protects against obesity and metabolic dysfunction [gene expression]
GSE102290 KDM4B epigenetically protects against obesity and metabolic dysfunction

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 575.814 P 6.02111e-05
AFFX-BioB-M_at 929.488 P 4.42873e-05
AFFX-BioB-3_at 581.28 P 4.42873e-05
AFFX-BioC-5_at 1512.13 P 4.42873e-05
AFFX-BioC-3_at 1846.53 P 4.42873e-05
AFFX-BioDn-5_at 4172.32 P 4.42873e-05
AFFX-BioDn-3_at 6591.01 P 4.42873e-05
AFFX-CreX-5_at 22632.2 P 5.16732e-05
AFFX-CreX-3_at 21496.3 P 4.42873e-05
AFFX-DapX-5_at 15.5266 A 0.313708
AFFX-DapX-M_at 2.22667 A 0.699394
AFFX-DapX-3_at 2.29323 A 0.804816
AFFX-LysX-5_at 6.73159 A 0.71229
AFFX-LysX-M_at 3.20055 A 0.794288
AFFX-LysX-3_at 21.6151 M 0.0542134
AFFX-PheX-5_at 1.551 A 0.93239
AFFX-PheX-M_at 1.31725 A 0.910541
AFFX-PheX-3_at 17.8432 A 0.41138
AFFX-ThrX-5_at 4.27229 A 0.712257
AFFX-ThrX-M_at 0.877918 A 0.910522

Total number of rows: 45101

Table truncated, full table size 1392 Kbytes.




Supplementary file Size Download File type/resource
GSM2733390_SubQ_WT.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM2733390_SubQ_WT.mas5.CHP.gz 394.4 Kb (ftp)(http) CHP
Processed data included within Sample table

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