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Sample GSM2701809

Query DataSets for GSM2701809

Status

Public on Jul 16, 2017

Title

ChIP-seq from ascending aorta (ENCLB626HJU)

Sample type

SRA

Source name

Homo sapiens ascending aorta tissue female adult (51 year)

Organism

Homo sapiens

Characteristics

antibody: H3K27ac
tissue_type: ascending aorta
biomaterial_type: tissue
description: EnTEX: Artery- Aorta
biosample encode accession: ENCBS273PSC (SAMN07278351)
dev stage: adult
lab: Bradley Bernstein, Broad
age: 51 year
donor_id: ENCDO271OUW
Sex: female
link: ENCBS273PSC at ENCODE; https://www.encodeproject.org/ENCBS273PSC/
link: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

Extracted molecule

genomic DNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2500

Description

https://www.encodeproject.org/experiments/ENCSR982QIF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR982QIF
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR494YJW
encode release date: 2017-06-08
lab: Bradley Bernstein, Broad
library encode accession: ENCLB626HJU
size range: 200-600

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Jul 13, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL16791

Series (1)

GSE101384

ChIP-seq from ascending aorta (ENCSR982QIF)

Relations

BioSample

SAMN07278351

SRA

SRX3010256

Named Annotation

GSM2701809_ENCFF573UBD_signal_p-value_GRCh38.bigWig

Named Annotation

GSM2701809_ENCFF382DWX_fold_change_over_control_hg19.bigWig

Named Annotation

GSM2701809_ENCFF109PKU_fold_change_over_control_GRCh38.bigWig

Named Annotation

GSM2701809_ENCFF002VCM_signal_p-value_hg19.bigWig

Supplementary file	Size	Download	File type/resource
GSM2701809_ENCFF002VCM_signal_p-value_hg19.bigWig	828.7 Mb	(ftp)(http)	BIGWIG
GSM2701809_ENCFF015XHP_peaks_hg19.bed.gz	2.0 Mb	(ftp)(http)	BED
GSM2701809_ENCFF020COG_peaks_GRCh38.bed.gz	2.0 Mb	(ftp)(http)	BED
GSM2701809_ENCFF109PKU_fold_change_over_control_GRCh38.bigWig	953.0 Mb	(ftp)(http)	BIGWIG
GSM2701809_ENCFF291LEP_stable_peaks_GRCh38.bed.gz	1.8 Mb	(ftp)(http)	BED
GSM2701809_ENCFF382DWX_fold_change_over_control_hg19.bigWig	947.3 Mb	(ftp)(http)	BIGWIG
GSM2701809_ENCFF495JIW_stable_peaks_hg19.bed.gz	1.8 Mb	(ftp)(http)	BED
GSM2701809_ENCFF569JIQ_peaks_GRCh38.bigBed	5.2 Mb	(ftp)(http)	BIGBED
GSM2701809_ENCFF573UBD_signal_p-value_GRCh38.bigWig	1.0 Gb	(ftp)(http)	BIGWIG
GSM2701809_ENCFF701AHK_stable_peaks_hg19.bigBed	3.4 Mb	(ftp)(http)	BIGBED
GSM2701809_ENCFF818NBU_stable_peaks_GRCh38.bigBed	3.4 Mb	(ftp)(http)	BIGBED
GSM2701809_ENCFF855YPO_peaks_hg19.bigBed	5.3 Mb	(ftp)(http)	BIGBED
GSM2701809_ENCLB626HJU_README.txt.gz	1.1 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file