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Sample GSM2701748 Query DataSets for GSM2701748
Status Public on Jul 16, 2017
Title ChIP-seq from esophagus squamous epithelium (ENCLB926RHQ)
Sample type SRA
 
Source name Homo sapiens esophagus squamous epithelium tissue female adult (53 years)
Organism Homo sapiens
Characteristics antibody: H3K27ac
tissue_type: esophagus squamous epithelium
biomaterial_type: tissue
description: EnTEX: Esophagus - Mucosa
biosample encode accession: ENCBS054JUC (SAMN06464306)
dev stage: adult
Sex: female
donor_id: ENCDO793LXB
age: 53 year
lab: Bradley Bernstein, Broad
link: ENCBS054JUC at ENCODE; https://www.encodeproject.org/ENCBS054JUC/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR909UAG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR909UAG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR652EPR
encode release date: 2016-11-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB926RHQ
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jul 12, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE101367 ChIP-seq from esophagus squamous epithelium (ENCSR909UAG)
Relations
BioSample SAMN06464306
SRA SRX3010232
Named Annotation GSM2701748_ENCFF929JBX_signal_p-value_GRCh38.bigWig
Named Annotation GSM2701748_ENCFF320HXP_signal_p-value_hg19.bigWig
Named Annotation GSM2701748_ENCFF511QGD_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2701748_ENCFF093YZS_fold_change_over_control_hg19.bigWig

Supplementary file Size Download File type/resource
GSM2701748_ENCFF093YZS_fold_change_over_control_hg19.bigWig 759.2 Mb (ftp)(http) BIGWIG
GSM2701748_ENCFF120CNH_peaks_GRCh38.bigBed 6.8 Mb (ftp)(http) BIGBED
GSM2701748_ENCFF137CFG_peaks_GRCh38.bed.gz 2.6 Mb (ftp)(http) BED
GSM2701748_ENCFF187KWD_stable_peaks_hg19.bed.gz 2.2 Mb (ftp)(http) BED
GSM2701748_ENCFF319VCL_peaks_hg19.bigBed 6.7 Mb (ftp)(http) BIGBED
GSM2701748_ENCFF320HXP_signal_p-value_hg19.bigWig 818.3 Mb (ftp)(http) BIGWIG
GSM2701748_ENCFF466DPJ_peaks_hg19.bed.gz 2.6 Mb (ftp)(http) BED
GSM2701748_ENCFF511QGD_fold_change_over_control_GRCh38.bigWig 759.8 Mb (ftp)(http) BIGWIG
GSM2701748_ENCFF588QNH_stable_peaks_hg19.bigBed 4.3 Mb (ftp)(http) BIGBED
GSM2701748_ENCFF696QZI_stable_peaks_GRCh38.bed.gz 2.2 Mb (ftp)(http) BED
GSM2701748_ENCFF744CUT_stable_peaks_GRCh38.bigBed 4.3 Mb (ftp)(http) BIGBED
GSM2701748_ENCFF929JBX_signal_p-value_GRCh38.bigWig 872.7 Mb (ftp)(http) BIGWIG
GSM2701748_ENCLB926RHQ_README.txt.gz 1.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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