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Sample GSM2701097

Query DataSets for GSM2701097

Status

Public on Jul 16, 2017

Title

ChIP-seq from Peyer's patch (ENCLB415JQU)

Sample type

SRA

Source name

Homo sapiens Peyer's patch tissue female adult (53 years)

Organism

Homo sapiens

Characteristics

antibody: H3K27ac
tissue_type: Peyer's patch
biomaterial_type: tissue
description: EnTEX: Small Intestine - Terminal Ileum
biosample encode accession: ENCBS766ILR (SAMN06464503)
dev stage: adult
Sex: female
donor_id: ENCDO793LXB
age: 53 year
lab: Bradley Bernstein, Broad
link: ENCBS766ILR at ENCODE; https://www.encodeproject.org/ENCBS766ILR/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

Extracted molecule

genomic DNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2500

Description

https://www.encodeproject.org/experiments/ENCSR837SGJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR837SGJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR124GAS
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB415JQU
size range: 200-600

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Jul 12, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL16791

Series (1)

GSE101324

ChIP-seq from Peyer's patch (ENCSR837SGJ)

Relations

BioSample

SAMN06464503

SRA

SRX3010162

Named Annotation

GSM2701097_ENCFF116SKK_signal_p-value_GRCh38.bigWig

Named Annotation

GSM2701097_ENCFF664RTR_fold_change_over_control_hg19.bigWig

Named Annotation

GSM2701097_ENCFF859ITG_fold_change_over_control_GRCh38.bigWig

Named Annotation

GSM2701097_ENCFF284VHL_signal_p-value_hg19.bigWig

Supplementary file	Size	Download	File type/resource
GSM2701097_ENCFF116SKK_signal_p-value_GRCh38.bigWig	709.5 Mb	(ftp)(http)	BIGWIG
GSM2701097_ENCFF212BRR_stable_peaks_hg19.bigBed	3.9 Mb	(ftp)(http)	BIGBED
GSM2701097_ENCFF218SQX_stable_peaks_GRCh38.bed.gz	1.9 Mb	(ftp)(http)	BED
GSM2701097_ENCFF284VHL_signal_p-value_hg19.bigWig	970.9 Mb	(ftp)(http)	BIGWIG
GSM2701097_ENCFF357MJZ_stable_peaks_hg19.bed.gz	2.0 Mb	(ftp)(http)	BED
GSM2701097_ENCFF423DTN_peaks_GRCh38.bed.gz	2.3 Mb	(ftp)(http)	BED
GSM2701097_ENCFF581WDX_peaks_hg19.bed.gz	2.3 Mb	(ftp)(http)	BED
GSM2701097_ENCFF642WKY_peaks_hg19.bigBed	6.2 Mb	(ftp)(http)	BIGBED
GSM2701097_ENCFF664RTR_fold_change_over_control_hg19.bigWig	802.9 Mb	(ftp)(http)	BIGWIG
GSM2701097_ENCFF685JZA_peaks_GRCh38.bigBed	6.1 Mb	(ftp)(http)	BIGBED
GSM2701097_ENCFF688GJH_stable_peaks_GRCh38.bigBed	3.7 Mb	(ftp)(http)	BIGBED
GSM2701097_ENCFF859ITG_fold_change_over_control_GRCh38.bigWig	764.3 Mb	(ftp)(http)	BIGWIG
GSM2701097_ENCLB415JQU_README.txt.gz	1.1 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file