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Sample GSM2700602

Query DataSets for GSM2700602

Status

Public on Jul 12, 2017

Title

ChIP-seq from tibial nerve (ENCLB983BAB)

Sample type

SRA

Source name

Homo sapiens tibial nerve tissue female adult (53 years)

Organism

Homo sapiens

Characteristics

antibody: H3K27ac
tissue_type: tibial nerve
biomaterial_type: tissue
description: EnTEX: Nerve - Tibial
biosample encode accession: ENCBS248LIK (SAMN07278358)
dev stage: adult
lab: Bradley Bernstein, Broad
age: 53 year
donor_id: ENCDO793LXB
Sex: female
link: ENCBS248LIK at ENCODE; https://www.encodeproject.org/ENCBS248LIK/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

Extracted molecule

genomic DNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2500

Description

https://www.encodeproject.org/experiments/ENCSR771YJT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR771YJT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR154SJE
encode release date: 2017-01-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB983BAB
size range: 200-600

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Jul 12, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL16791

Series (1)

GSE101273

ChIP-seq from tibial nerve (ENCSR771YJT)

Relations

BioSample

SAMN07278358

SRA

SRX3010145

Named Annotation

GSM2700602_ENCFF563ABT_signal_p-value_hg19.bigWig

Named Annotation

GSM2700602_ENCFF817FJA_fold_change_over_control_hg19.bigWig

Named Annotation

GSM2700602_ENCFF420PYG_fold_change_over_control_GRCh38.bigWig

Named Annotation

GSM2700602_ENCFF783DTK_signal_p-value_GRCh38.bigWig

Supplementary file	Size	Download	File type/resource
GSM2700602_ENCFF134SOM_stable_peaks_GRCh38.bed.gz	2.2 Mb	(ftp)(http)	BED
GSM2700602_ENCFF221LDE_stable_peaks_hg19.bed.gz	2.1 Mb	(ftp)(http)	BED
GSM2700602_ENCFF339IAZ_stable_peaks_GRCh38.bigBed	4.3 Mb	(ftp)(http)	BIGBED
GSM2700602_ENCFF392RXW_peaks_hg19.bed.gz	2.7 Mb	(ftp)(http)	BED
GSM2700602_ENCFF420PYG_fold_change_over_control_GRCh38.bigWig	656.1 Mb	(ftp)(http)	BIGWIG
GSM2700602_ENCFF525VZP_stable_peaks_hg19.bigBed	4.1 Mb	(ftp)(http)	BIGBED
GSM2700602_ENCFF563ABT_signal_p-value_hg19.bigWig	842.6 Mb	(ftp)(http)	BIGWIG
GSM2700602_ENCFF783DTK_signal_p-value_GRCh38.bigWig	836.6 Mb	(ftp)(http)	BIGWIG
GSM2700602_ENCFF786UMK_peaks_GRCh38.bed.gz	2.8 Mb	(ftp)(http)	BED
GSM2700602_ENCFF799HLT_peaks_hg19.bigBed	6.9 Mb	(ftp)(http)	BIGBED
GSM2700602_ENCFF817FJA_fold_change_over_control_hg19.bigWig	641.5 Mb	(ftp)(http)	BIGWIG
GSM2700602_ENCFF853QLM_peaks_GRCh38.bigBed	7.2 Mb	(ftp)(http)	BIGBED
GSM2700602_ENCLB983BAB_README.txt.gz	1.1 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file