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Sample GSM2700592 Query DataSets for GSM2700592
Status Public on Jul 12, 2017
Title ChIP-seq from upper lobe of left lung (ENCLB929TAJ)
Sample type SRA
 
Source name Homo sapiens upper lobe of left lung tissue female adult (53 years)
Organism Homo sapiens
Characteristics antibody: H3K27ac
tissue_type: upper lobe of left lung
biomaterial_type: tissue
description: EnTEX: Lung
biosample encode accession: ENCBS684YJH (SAMN07278357)
dev stage: adult
lab: Bradley Bernstein, Broad
age: 53 year
donor_id: ENCDO793LXB
Sex: female
link: ENCBS684YJH at ENCODE; https://www.encodeproject.org/ENCBS684YJH/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR738SXD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR738SXD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR422TGJ
encode release date: 2016-11-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB929TAJ
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jul 12, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE101265 ChIP-seq from upper lobe of left lung (ENCSR738SXD)
Relations
BioSample SAMN07278357
SRA SRX3010136
Named Annotation GSM2700592_ENCFF870RAN_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2700592_ENCFF466IUA_signal_p-value_GRCh38.bigWig
Named Annotation GSM2700592_ENCFF017IRQ_fold_change_over_control_hg19.bigWig
Named Annotation GSM2700592_ENCFF071QUR_signal_p-value_hg19.bigWig

Supplementary file Size Download File type/resource
GSM2700592_ENCFF017IRQ_fold_change_over_control_hg19.bigWig 638.8 Mb (ftp)(http) BIGWIG
GSM2700592_ENCFF071QUR_signal_p-value_hg19.bigWig 756.0 Mb (ftp)(http) BIGWIG
GSM2700592_ENCFF095NZO_peaks_hg19.bigBed 6.0 Mb (ftp)(http) BIGBED
GSM2700592_ENCFF255UVJ_stable_peaks_hg19.bigBed 3.3 Mb (ftp)(http) BIGBED
GSM2700592_ENCFF466IUA_signal_p-value_GRCh38.bigWig 678.8 Mb (ftp)(http) BIGWIG
GSM2700592_ENCFF661QTR_peaks_GRCh38.bed.gz 2.2 Mb (ftp)(http) BED
GSM2700592_ENCFF667IAI_stable_peaks_hg19.bed.gz 1.6 Mb (ftp)(http) BED
GSM2700592_ENCFF707BRS_peaks_GRCh38.bigBed 5.7 Mb (ftp)(http) BIGBED
GSM2700592_ENCFF739WJV_stable_peaks_GRCh38.bigBed 3.2 Mb (ftp)(http) BIGBED
GSM2700592_ENCFF752URW_peaks_hg19.bed.gz 2.3 Mb (ftp)(http) BED
GSM2700592_ENCFF870RAN_fold_change_over_control_GRCh38.bigWig 625.9 Mb (ftp)(http) BIGWIG
GSM2700592_ENCFF963YDV_stable_peaks_GRCh38.bed.gz 1.6 Mb (ftp)(http) BED
GSM2700592_ENCLB929TAJ_README.txt.gz 1.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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