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Sample GSM2700584 Query DataSets for GSM2700584
Status Public on Jul 12, 2017
Title ChIP-seq from thyroid gland (ENCLB838IRP)
Sample type SRA
 
Source name Homo sapiens thyroid gland tissue female adult (53 years)
Organism Homo sapiens
Characteristics antibody: H3K27ac
tissue_type: thyroid gland
biomaterial_type: tissue
description: EnTEX: Thyroid
biosample encode accession: ENCBS586UUR (SAMN07278362)
dev stage: adult
lab: Bradley Bernstein, Broad
age: 53 year
donor_id: ENCDO793LXB
Sex: female
link: ENCBS586UUR at ENCODE; https://www.encodeproject.org/ENCBS586UUR/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR716FUH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR716FUH
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR475NOQ
encode release date: 2016-11-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB838IRP
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jul 12, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE101258 ChIP-seq from thyroid gland (ENCSR716FUH)
Relations
BioSample SAMN07278362
SRA SRX3010128
Named Annotation GSM2700584_ENCFF674SKA_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2700584_ENCFF547SZU_fold_change_over_control_hg19.bigWig
Named Annotation GSM2700584_ENCFF908ZKL_signal_p-value_hg19.bigWig
Named Annotation GSM2700584_ENCFF059TPD_signal_p-value_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2700584_ENCFF009YDA_peaks_GRCh38.bigBed 5.0 Mb (ftp)(http) BIGBED
GSM2700584_ENCFF059TPD_signal_p-value_GRCh38.bigWig 731.6 Mb (ftp)(http) BIGWIG
GSM2700584_ENCFF093DSS_stable_peaks_hg19.bed.gz 1.6 Mb (ftp)(http) BED
GSM2700584_ENCFF211WDR_peaks_hg19.bed.gz 1.9 Mb (ftp)(http) BED
GSM2700584_ENCFF313FKQ_stable_peaks_hg19.bigBed 3.3 Mb (ftp)(http) BIGBED
GSM2700584_ENCFF361ZQK_peaks_GRCh38.bed.gz 1.9 Mb (ftp)(http) BED
GSM2700584_ENCFF422YOG_stable_peaks_GRCh38.bed.gz 1.6 Mb (ftp)(http) BED
GSM2700584_ENCFF547SZU_fold_change_over_control_hg19.bigWig 687.5 Mb (ftp)(http) BIGWIG
GSM2700584_ENCFF674SKA_fold_change_over_control_GRCh38.bigWig 695.7 Mb (ftp)(http) BIGWIG
GSM2700584_ENCFF779UME_stable_peaks_GRCh38.bigBed 3.3 Mb (ftp)(http) BIGBED
GSM2700584_ENCFF871BCI_peaks_hg19.bigBed 5.2 Mb (ftp)(http) BIGBED
GSM2700584_ENCFF908ZKL_signal_p-value_hg19.bigWig 758.9 Mb (ftp)(http) BIGWIG
GSM2700584_ENCLB838IRP_README.txt.gz 1.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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