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Sample GSM2700578 Query DataSets for GSM2700578
Status Public on Jul 12, 2017
Title ChIP-seq from gastroesophageal sphincter (ENCLB927ZZP)
Sample type SRA
 
Source name Homo sapiens gastroesophageal sphincter tissue female adult (53 years)
Organism Homo sapiens
Characteristics antibody: H3K27ac
tissue_type: gastroesophageal sphincter
biomaterial_type: tissue
description: EnTEX: Esophagus - Gastroesophageal Junction
biosample encode accession: ENCBS783BYN (SAMN06464513)
dev stage: adult
Sex: female
donor_id: ENCDO793LXB
age: 53 year
lab: Bradley Bernstein, Broad
link: ENCBS783BYN at ENCODE; https://www.encodeproject.org/ENCBS783BYN/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR677LBH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR677LBH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR178MWD
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB927ZZP
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jul 12, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE101253 ChIP-seq from gastroesophageal sphincter (ENCSR677LBH)
Relations
BioSample SAMN06464513
SRA SRX3010121
Named Annotation GSM2700578_ENCFF326CWT_signal_p-value_GRCh38.bigWig
Named Annotation GSM2700578_ENCFF870AFA_signal_p-value_hg19.bigWig
Named Annotation GSM2700578_ENCFF636GAV_fold_change_over_control_hg19.bigWig
Named Annotation GSM2700578_ENCFF219UQX_fold_change_over_control_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2700578_ENCFF172UXL_peaks_hg19.bed.gz 2.1 Mb (ftp)(http) BED
GSM2700578_ENCFF177WNT_stable_peaks_hg19.bed.gz 1.9 Mb (ftp)(http) BED
GSM2700578_ENCFF219UQX_fold_change_over_control_GRCh38.bigWig 521.8 Mb (ftp)(http) BIGWIG
GSM2700578_ENCFF270BUO_stable_peaks_GRCh38.bigBed 3.6 Mb (ftp)(http) BIGBED
GSM2700578_ENCFF326CWT_signal_p-value_GRCh38.bigWig 663.4 Mb (ftp)(http) BIGWIG
GSM2700578_ENCFF601HAA_stable_peaks_GRCh38.bed.gz 1.9 Mb (ftp)(http) BED
GSM2700578_ENCFF636GAV_fold_change_over_control_hg19.bigWig 533.2 Mb (ftp)(http) BIGWIG
GSM2700578_ENCFF721ETE_stable_peaks_hg19.bigBed 3.6 Mb (ftp)(http) BIGBED
GSM2700578_ENCFF825DAA_peaks_hg19.bigBed 5.5 Mb (ftp)(http) BIGBED
GSM2700578_ENCFF855ZBT_peaks_GRCh38.bigBed 5.6 Mb (ftp)(http) BIGBED
GSM2700578_ENCFF870AFA_signal_p-value_hg19.bigWig 699.9 Mb (ftp)(http) BIGWIG
GSM2700578_ENCFF888CQV_peaks_GRCh38.bed.gz 2.1 Mb (ftp)(http) BED
GSM2700578_ENCLB927ZZP_README.txt.gz 1.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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