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Sample GSM2700502 Query DataSets for GSM2700502
Status Public on Jul 12, 2017
Title ChIP-seq from body of pancreas (ENCLB149DDE)
Sample type SRA
 
Source name Homo sapiens body of pancreas tissue male adult (54 years)
Organism Homo sapiens
Characteristics antibody: H3K27ac
tissue_type: body of pancreas
biomaterial_type: tissue
description: EnTEX: Pancreas
biosample encode accession: ENCBS209WBW (SAMN06464347)
dev stage: adult
Sex: male
donor_id: ENCDO451RUA
age: 54 year
lab: Bradley Bernstein, Broad
link: ENCBS209WBW at ENCODE; https://www.encodeproject.org/ENCBS209WBW/
link: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR596PFU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR596PFU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR099LGH
encode release date: 2016-07-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB149DDE
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jul 11, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE101231 ChIP-seq from body of pancreas (ENCSR596PFU)
Relations
BioSample SAMN06464347
SRA SRX3010086
Named Annotation GSM2700502_ENCFF090XYL_fold_change_over_control_hg19.bigWig
Named Annotation GSM2700502_ENCFF548KBM_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2700502_ENCFF946SUV_signal_p-value_GRCh38.bigWig
Named Annotation GSM2700502_ENCFF554AUP_signal_p-value_hg19.bigWig

Supplementary file Size Download File type/resource
GSM2700502_ENCFF023CGC_peaks_hg19.bigBed 4.8 Mb (ftp)(http) BIGBED
GSM2700502_ENCFF090XYL_fold_change_over_control_hg19.bigWig 936.3 Mb (ftp)(http) BIGWIG
GSM2700502_ENCFF186FLZ_stable_peaks_hg19.bigBed 3.1 Mb (ftp)(http) BIGBED
GSM2700502_ENCFF227ZLQ_stable_peaks_hg19.bed.gz 1.5 Mb (ftp)(http) BED
GSM2700502_ENCFF230XMP_peaks_GRCh38.bigBed 4.8 Mb (ftp)(http) BIGBED
GSM2700502_ENCFF503SNH_peaks_hg19.bed.gz 1.8 Mb (ftp)(http) BED
GSM2700502_ENCFF548KBM_fold_change_over_control_GRCh38.bigWig 932.5 Mb (ftp)(http) BIGWIG
GSM2700502_ENCFF554AUP_signal_p-value_hg19.bigWig 1.0 Gb (ftp)(http) BIGWIG
GSM2700502_ENCFF573CFJ_stable_peaks_GRCh38.bed.gz 1.5 Mb (ftp)(http) BED
GSM2700502_ENCFF922URN_peaks_GRCh38.bed.gz 1.8 Mb (ftp)(http) BED
GSM2700502_ENCFF946SUV_signal_p-value_GRCh38.bigWig 1.1 Gb (ftp)(http) BIGWIG
GSM2700502_ENCFF963WIG_stable_peaks_GRCh38.bigBed 3.1 Mb (ftp)(http) BIGBED
GSM2700502_ENCLB149DDE_README.txt.gz 1.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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