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Sample GSM2700501 Query DataSets for GSM2700501
Status Public on Jul 12, 2017
Title ChIP-seq from right atrium auricular region (ENCLB611VQY)
Sample type SRA
 
Source name Homo sapiens right atrium auricular region tissue female adult (53 years)
Organism Homo sapiens
Characteristics antibody: H3K27ac
tissue_type: right atrium auricular region
biomaterial_type: tissue
description: EnTEX: Heart - Atrial Appendage
biosample encode accession: ENCBS493WOF (SAMN07278356)
dev stage: adult
lab: Bradley Bernstein, Broad
age: 53 year
donor_id: ENCDO793LXB
Sex: female
link: ENCBS493WOF at ENCODE; https://www.encodeproject.org/ENCBS493WOF/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR593KDJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR593KDJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR195BZZ
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB611VQY
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jul 11, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE101230 ChIP-seq from right atrium auricular region (ENCSR593KDJ)
Relations
BioSample SAMN07278356
SRA SRX3010093
Named Annotation GSM2700501_ENCFF790FPZ_signal_p-value_hg19.bigWig
Named Annotation GSM2700501_ENCFF281ZIR_signal_p-value_GRCh38.bigWig
Named Annotation GSM2700501_ENCFF890ARB_fold_change_over_control_hg19.bigWig
Named Annotation GSM2700501_ENCFF880HJF_fold_change_over_control_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2700501_ENCFF052BXS_peaks_GRCh38.bed.gz 2.1 Mb (ftp)(http) BED
GSM2700501_ENCFF159NYF_stable_peaks_hg19.bed.gz 1.9 Mb (ftp)(http) BED
GSM2700501_ENCFF281ZIR_signal_p-value_GRCh38.bigWig 799.6 Mb (ftp)(http) BIGWIG
GSM2700501_ENCFF447VLE_stable_peaks_hg19.bigBed 3.6 Mb (ftp)(http) BIGBED
GSM2700501_ENCFF575YCD_stable_peaks_GRCh38.bigBed 3.7 Mb (ftp)(http) BIGBED
GSM2700501_ENCFF665YKX_peaks_hg19.bed.gz 2.0 Mb (ftp)(http) BED
GSM2700501_ENCFF777LYB_stable_peaks_GRCh38.bed.gz 1.9 Mb (ftp)(http) BED
GSM2700501_ENCFF790FPZ_signal_p-value_hg19.bigWig 925.8 Mb (ftp)(http) BIGWIG
GSM2700501_ENCFF880HJF_fold_change_over_control_GRCh38.bigWig 601.8 Mb (ftp)(http) BIGWIG
GSM2700501_ENCFF880IAP_peaks_hg19.bigBed 5.4 Mb (ftp)(http) BIGBED
GSM2700501_ENCFF890ARB_fold_change_over_control_hg19.bigWig 623.7 Mb (ftp)(http) BIGWIG
GSM2700501_ENCFF924VBC_peaks_GRCh38.bigBed 5.5 Mb (ftp)(http) BIGBED
GSM2700501_ENCLB611VQY_README.txt.gz 1.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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