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Sample GSM2700494 Query DataSets for GSM2700494
Status Public on Jul 12, 2017
Title ChIP-seq from K562 (ENCLB875TFE)
Sample type SRA
 
Source name Homo sapiens K562 immortalized cell line
Organism Homo sapiens
Characteristics antibody: BRD4
line: K562
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS658RMI (SAMN07278345)
dev stage: adult
passage number: 6
lab: Bradley Bernstein, Broad
age: 53 year
health state: chronic myelogenous leukemia (CML)
Sex: female
link: ENCBS658RMI at ENCODE; https://www.encodeproject.org/ENCBS658RMI/
link: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/f35827f6-da4a-42a6-b4bd-9e1b8b6c1663/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v2.0.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR583ACG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR583ACG
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR000AKY
encode release date: 2017-01-08
lab: Bradley Bernstein, Broad
library encode accession: ENCLB875TFE
size range: 200-600
nucleic acid starting quantity: 12.2
nucleic acid starting quantity units: ng
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jul 11, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE101225 ChIP-seq from K562 (ENCSR583ACG)
Relations
BioSample SAMN07278345
SRA SRX3010090
Named Annotation GSM2700494_ENCFF324AFU_fold_change_over_control_hg19.bigWig
Named Annotation GSM2700494_ENCFF980MNI_signal_p-value_GRCh38.bigWig
Named Annotation GSM2700494_ENCFF726ZOI_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2700494_ENCFF005YPU_signal_p-value_hg19.bigWig

Supplementary file Size Download File type/resource
GSM2700494_ENCFF005YPU_signal_p-value_hg19.bigWig 334.6 Mb (ftp)(http) BIGWIG
GSM2700494_ENCFF267CBS_peaks_hg19.bed.gz 5.7 Mb (ftp)(http) BED
GSM2700494_ENCFF324AFU_fold_change_over_control_hg19.bigWig 439.0 Mb (ftp)(http) BIGWIG
GSM2700494_ENCFF522VTB_peaks_hg19.bigBed 12.5 Mb (ftp)(http) BIGBED
GSM2700494_ENCFF726ZOI_fold_change_over_control_GRCh38.bigWig 439.8 Mb (ftp)(http) BIGWIG
GSM2700494_ENCFF855GPH_peaks_GRCh38.bigBed 12.5 Mb (ftp)(http) BIGBED
GSM2700494_ENCFF884DZX_peaks_GRCh38.bed.gz 5.7 Mb (ftp)(http) BED
GSM2700494_ENCFF980MNI_signal_p-value_GRCh38.bigWig 334.3 Mb (ftp)(http) BIGWIG
GSM2700494_ENCLB875TFE_README.txt.gz 1.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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