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Sample GSM2700035

Query DataSets for GSM2700035

Status

Public on Jul 12, 2017

Title

ChIP-seq from coronary artery (ENCLB728WPJ)

Sample type

SRA

Source name

Homo sapiens coronary artery tissue female adult (53 years)

Organism

Homo sapiens

Characteristics

antibody: H3K27ac
tissue_type: coronary artery
biomaterial_type: tissue
description: EnTEX: Artery - Coronary
biosample encode accession: ENCBS474IPU (SAMN06464419)
dev stage: adult
Sex: female
donor_id: ENCDO793LXB
age: 53 year
lab: Bradley Bernstein, Broad
link: ENCBS474IPU at ENCODE; https://www.encodeproject.org/ENCBS474IPU/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

Extracted molecule

genomic DNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2500

Description

https://www.encodeproject.org/experiments/ENCSR443UYU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR443UYU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR122GIL
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB728WPJ
size range: 200-600

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Jul 11, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL16791

Series (1)

GSE101160

ChIP-seq from coronary artery (ENCSR443UYU)

Relations

BioSample

SAMN06464419

SRA

SRX3010029

Named Annotation

GSM2700035_ENCFF970RKM_fold_change_over_control_GRCh38.bigWig

Named Annotation

GSM2700035_ENCFF172MCO_fold_change_over_control_hg19.bigWig

Named Annotation

GSM2700035_ENCFF727JCQ_signal_p-value_GRCh38.bigWig

Named Annotation

GSM2700035_ENCFF609WYJ_signal_p-value_hg19.bigWig

Supplementary file	Size	Download	File type/resource
GSM2700035_ENCFF064EFF_stable_peaks_hg19.bigBed	4.5 Mb	(ftp)(http)	BIGBED
GSM2700035_ENCFF118JDC_peaks_hg19.bigBed	6.5 Mb	(ftp)(http)	BIGBED
GSM2700035_ENCFF130AWQ_stable_peaks_hg19.bed.gz	2.4 Mb	(ftp)(http)	BED
GSM2700035_ENCFF172MCO_fold_change_over_control_hg19.bigWig	656.4 Mb	(ftp)(http)	BIGWIG
GSM2700035_ENCFF285YID_stable_peaks_GRCh38.bigBed	4.5 Mb	(ftp)(http)	BIGBED
GSM2700035_ENCFF416XTF_peaks_hg19.bed.gz	2.5 Mb	(ftp)(http)	BED
GSM2700035_ENCFF609WYJ_signal_p-value_hg19.bigWig	757.3 Mb	(ftp)(http)	BIGWIG
GSM2700035_ENCFF618VAN_stable_peaks_GRCh38.bed.gz	2.4 Mb	(ftp)(http)	BED
GSM2700035_ENCFF727JCQ_signal_p-value_GRCh38.bigWig	800.9 Mb	(ftp)(http)	BIGWIG
GSM2700035_ENCFF809KVP_peaks_GRCh38.bigBed	6.6 Mb	(ftp)(http)	BIGBED
GSM2700035_ENCFF874DSY_peaks_GRCh38.bed.gz	2.5 Mb	(ftp)(http)	BED
GSM2700035_ENCFF970RKM_fold_change_over_control_GRCh38.bigWig	648.2 Mb	(ftp)(http)	BIGWIG
GSM2700035_ENCLB728WPJ_README.txt.gz	1.1 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file