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Sample GSM2698835 Query DataSets for GSM2698835
Status Public on Jul 12, 2017
Title ChIP-seq from uterus (ENCLB643BVJ)
Sample type SRA
 
Source name Homo sapiens uterus tissue female adult (53 years)
Organism Homo sapiens
Characteristics antibody: H3K27ac
tissue_type: uterus
biomaterial_type: tissue
description: EnTEX: Uterus
biosample encode accession: ENCBS469FLQ (SAMN07278363)
dev stage: adult
lab: Bradley Bernstein, Broad
age: 53 year
donor_id: ENCDO793LXB
Sex: female
link: ENCBS469FLQ at ENCODE; https://www.encodeproject.org/ENCBS469FLQ/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR249INE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR249INE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR979XBX
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB643BVJ
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jul 10, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE101065 ChIP-seq from uterus (ENCSR249INE)
Relations
BioSample SAMN07278363
SRA SRX3010010
Named Annotation GSM2698835_ENCFF407ITR_signal_p-value_GRCh38.bigWig
Named Annotation GSM2698835_ENCFF801LLM_fold_change_over_control_hg19.bigWig
Named Annotation GSM2698835_ENCFF313JOE_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2698835_ENCFF090IUI_signal_p-value_hg19.bigWig

Supplementary file Size Download File type/resource
GSM2698835_ENCFF045LNJ_stable_peaks_hg19.bed.gz 1.5 Mb (ftp)(http) BED
GSM2698835_ENCFF051TZK_peaks_GRCh38.bigBed 4.6 Mb (ftp)(http) BIGBED
GSM2698835_ENCFF090IUI_signal_p-value_hg19.bigWig 986.5 Mb (ftp)(http) BIGWIG
GSM2698835_ENCFF132NKP_stable_peaks_GRCh38.bed.gz 1.5 Mb (ftp)(http) BED
GSM2698835_ENCFF216KKS_peaks_GRCh38.bed.gz 1.7 Mb (ftp)(http) BED
GSM2698835_ENCFF313JOE_fold_change_over_control_GRCh38.bigWig 867.7 Mb (ftp)(http) BIGWIG
GSM2698835_ENCFF398KOD_peaks_hg19.bigBed 4.5 Mb (ftp)(http) BIGBED
GSM2698835_ENCFF407ITR_signal_p-value_GRCh38.bigWig 1023.4 Mb (ftp)(http) BIGWIG
GSM2698835_ENCFF546IIT_peaks_hg19.bed.gz 1.7 Mb (ftp)(http) BED
GSM2698835_ENCFF801LLM_fold_change_over_control_hg19.bigWig 867.4 Mb (ftp)(http) BIGWIG
GSM2698835_ENCFF908JWB_stable_peaks_hg19.bigBed 2.9 Mb (ftp)(http) BIGBED
GSM2698835_ENCFF955FZE_stable_peaks_GRCh38.bigBed 2.9 Mb (ftp)(http) BIGBED
GSM2698835_ENCLB643BVJ_README.txt.gz 1.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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