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Sample GSM2698631

Query DataSets for GSM2698631

Status

Public on Jul 10, 2017

Title

ChIP-seq from transverse colon (ENCLB169IZI)

Sample type

SRA

Source name

Homo sapiens transverse colon tissue female adult (53 years)

Organism

Homo sapiens

Characteristics

antibody: H3K27ac
tissue_type: transverse colon
biomaterial_type: tissue
description: EnTEX: Colon - Transverse
biosample encode accession: ENCBS765HGS (SAMN07278355)
dev stage: adult
lab: Bradley Bernstein, Broad
age: 53 year
donor_id: ENCDO793LXB
Sex: female
link: ENCBS765HGS at ENCODE; https://www.encodeproject.org/ENCBS765HGS/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

Extracted molecule

genomic DNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2500

Description

https://www.encodeproject.org/experiments/ENCSR208QRN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR208QRN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR828XQV
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB169IZI
size range: 200-600

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Jul 10, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL16791

Series (1)

GSE101031

ChIP-seq from transverse colon (ENCSR208QRN)

Relations

BioSample

SAMN07278355

SRA

SRX3009972

Named Annotation

GSM2698631_ENCFF856JEH_signal_p-value_hg19.bigWig

Named Annotation

GSM2698631_ENCFF083BTK_fold_change_over_control_GRCh38.bigWig

Named Annotation

GSM2698631_ENCFF673KHO_signal_p-value_GRCh38.bigWig

Named Annotation

GSM2698631_ENCFF167VPE_fold_change_over_control_hg19.bigWig

Supplementary file	Size	Download	File type/resource
GSM2698631_ENCFF083BTK_fold_change_over_control_GRCh38.bigWig	679.0 Mb	(ftp)(http)	BIGWIG
GSM2698631_ENCFF124SUB_stable_peaks_GRCh38.bigBed	3.0 Mb	(ftp)(http)	BIGBED
GSM2698631_ENCFF151PGH_peaks_GRCh38.bed.gz	1.8 Mb	(ftp)(http)	BED
GSM2698631_ENCFF167VPE_fold_change_over_control_hg19.bigWig	679.9 Mb	(ftp)(http)	BIGWIG
GSM2698631_ENCFF242DHB_stable_peaks_hg19.bed.gz	1.4 Mb	(ftp)(http)	BED
GSM2698631_ENCFF294XBV_peaks_GRCh38.bigBed	4.7 Mb	(ftp)(http)	BIGBED
GSM2698631_ENCFF660HJT_stable_peaks_GRCh38.bed.gz	1.5 Mb	(ftp)(http)	BED
GSM2698631_ENCFF673KHO_signal_p-value_GRCh38.bigWig	838.9 Mb	(ftp)(http)	BIGWIG
GSM2698631_ENCFF807LPY_stable_peaks_hg19.bigBed	2.9 Mb	(ftp)(http)	BIGBED
GSM2698631_ENCFF856JEH_signal_p-value_hg19.bigWig	723.9 Mb	(ftp)(http)	BIGWIG
GSM2698631_ENCFF902FLR_peaks_hg19.bed.gz	1.8 Mb	(ftp)(http)	BED
GSM2698631_ENCFF946WHM_peaks_hg19.bigBed	4.7 Mb	(ftp)(http)	BIGBED
GSM2698631_ENCLB169IZI_README.txt.gz	1.1 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file