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Sample GSM2698617 Query DataSets for GSM2698617
Status Public on Jul 10, 2017
Title ChIP-seq from esophagus muscularis mucosa (ENCLB836RTH)
Sample type SRA
 
Source name Homo sapiens esophagus muscularis mucosa tissue female adult (53 years)
Organism Homo sapiens
Characteristics antibody: H3K27ac
tissue_type: esophagus muscularis mucosa
biomaterial_type: tissue
description: EnTEX: Esophagus - Muscularis
biosample encode accession: ENCBS071FUE (SAMN06464309)
dev stage: adult
Sex: female
donor_id: ENCDO793LXB
age: 53 year
lab: Bradley Bernstein, Broad
link: ENCBS071FUE at ENCODE; https://www.encodeproject.org/ENCBS071FUE/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR095YMD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR095YMD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR474WLZ
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB836RTH
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jul 10, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE101022 ChIP-seq from esophagus muscularis mucosa (ENCSR095YMD)
Relations
BioSample SAMN06464309
SRA SRX3010292
Named Annotation GSM2698617_ENCFF854HSN_signal_p-value_GRCh38.bigWig
Named Annotation GSM2698617_ENCFF282WYM_signal_p-value_hg19.bigWig
Named Annotation GSM2698617_ENCFF195GJT_fold_change_over_control_hg19.bigWig
Named Annotation GSM2698617_ENCFF883NAP_fold_change_over_control_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2698617_ENCFF060JMH_peaks_hg19.bed.gz 2.0 Mb (ftp)(http) BED
GSM2698617_ENCFF124LGO_stable_peaks_GRCh38.bigBed 3.2 Mb (ftp)(http) BIGBED
GSM2698617_ENCFF195GJT_fold_change_over_control_hg19.bigWig 589.8 Mb (ftp)(http) BIGWIG
GSM2698617_ENCFF282WYM_signal_p-value_hg19.bigWig 783.2 Mb (ftp)(http) BIGWIG
GSM2698617_ENCFF417IVN_peaks_hg19.bigBed 5.1 Mb (ftp)(http) BIGBED
GSM2698617_ENCFF484GTZ_stable_peaks_GRCh38.bed.gz 1.6 Mb (ftp)(http) BED
GSM2698617_ENCFF605GOS_stable_peaks_hg19.bigBed 3.2 Mb (ftp)(http) BIGBED
GSM2698617_ENCFF684PYK_peaks_GRCh38.bigBed 5.1 Mb (ftp)(http) BIGBED
GSM2698617_ENCFF693CZV_peaks_GRCh38.bed.gz 2.0 Mb (ftp)(http) BED
GSM2698617_ENCFF854HSN_signal_p-value_GRCh38.bigWig 787.5 Mb (ftp)(http) BIGWIG
GSM2698617_ENCFF883NAP_fold_change_over_control_GRCh38.bigWig 594.7 Mb (ftp)(http) BIGWIG
GSM2698617_ENCFF903OJB_stable_peaks_hg19.bed.gz 1.6 Mb (ftp)(http) BED
GSM2698617_ENCLB836RTH_README.txt.gz 1.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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