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Sample GSM2698422 Query DataSets for GSM2698422
Status Public on Jul 10, 2017
Title ChIP-seq from breast epithelium (ENCLB987VXJ)
Sample type SRA
 
Source name Homo sapiens breast epithelium tissue female adult (53 years)
Organism Homo sapiens
Characteristics antibody: H3K27ac
tissue_type: breast epithelium
biomaterial_type: tissue
description: EnTEX: Breast - Mammary Tissue
biosample encode accession: ENCBS433LAO (SAMN06464406)
dev stage: adult
Sex: female
donor_id: ENCDO793LXB
age: 53 year
lab: Bradley Bernstein, Broad
link: ENCBS433LAO at ENCODE; https://www.encodeproject.org/ENCBS433LAO/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR034ZKE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR034ZKE
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR247XFQ
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB987VXJ
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jul 09, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE100978 ChIP-seq from breast epithelium (ENCSR034ZKE)
Relations
BioSample SAMN06464406
SRA SRX3010196
Named Annotation GSM2698422_ENCFF317TTE_signal_p-value_GRCh38.bigWig
Named Annotation GSM2698422_ENCFF984VUL_fold_change_over_control_hg19.bigWig
Named Annotation GSM2698422_ENCFF865HUX_signal_p-value_hg19.bigWig
Named Annotation GSM2698422_ENCFF766AYD_fold_change_over_control_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2698422_ENCFF051KEE_peaks_GRCh38.bigBed 7.5 Mb (ftp)(http) BIGBED
GSM2698422_ENCFF154XFN_stable_peaks_hg19.bed.gz 2.4 Mb (ftp)(http) BED
GSM2698422_ENCFF190SES_stable_peaks_GRCh38.bed.gz 2.5 Mb (ftp)(http) BED
GSM2698422_ENCFF317TTE_signal_p-value_GRCh38.bigWig 725.2 Mb (ftp)(http) BIGWIG
GSM2698422_ENCFF481ARW_peaks_hg19.bed.gz 2.7 Mb (ftp)(http) BED
GSM2698422_ENCFF515ADO_peaks_hg19.bigBed 7.0 Mb (ftp)(http) BIGBED
GSM2698422_ENCFF529IMA_stable_peaks_hg19.bigBed 4.7 Mb (ftp)(http) BIGBED
GSM2698422_ENCFF613WTB_stable_peaks_GRCh38.bigBed 4.8 Mb (ftp)(http) BIGBED
GSM2698422_ENCFF766AYD_fold_change_over_control_GRCh38.bigWig 597.1 Mb (ftp)(http) BIGWIG
GSM2698422_ENCFF865HUX_signal_p-value_hg19.bigWig 667.7 Mb (ftp)(http) BIGWIG
GSM2698422_ENCFF938RGG_peaks_GRCh38.bed.gz 2.9 Mb (ftp)(http) BED
GSM2698422_ENCFF984VUL_fold_change_over_control_hg19.bigWig 599.8 Mb (ftp)(http) BIGWIG
GSM2698422_ENCLB987VXJ_README.txt.gz 1.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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