GEO Publications
Handout
NAR 2013 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM267999
Query DataSets for GSM267999
Status
Public on Mar 21, 2008
Title
Green leaves in F9G RILs from parents lines
Sample type
RNA
Source name
Oryza sativa leaf from recombinant inbreed line, normal green
Organism
Oryza sativa
Characteristics
green leaf in the vegetative stage
Extracted molecule
total RNA
Extraction protocol
Total RNA was prepared with the RNeasy plant Mini Kit (Qiagen).
Label
biotin
Label protocol
Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
green leaf tip in the vegetative stage
Data processing
GCOS1.2
Submission date
Feb 26, 2008
Last update date
Mar 20, 2008
Contact name
Angeline Su
Organization name
NCHU
Street address
Kuo Kuang road
City
Taichung
ZIP/Postal code
402
Country
Taiwan
Platform ID
GPL2025
Series (1)
GSE10872
Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
Data table header descriptions
ID_REF
VALUE
GCOS-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
495.49
P
0.000753643
AFFX-BioB-M_at
525.287
P
0.000146581
AFFX-BioB-3_at
282.619
P
0.000296708
AFFX-BioC-5_at
1283.93
P
6.02111e-05
AFFX-BioC-3_at
902.472
P
4.42873e-05
AFFX-BioDn-5_at
1680.83
P
4.42873e-05
AFFX-BioDn-3_at
6963.44
P
5.16732e-05
AFFX-CreX-5_at
15348.8
P
4.42873e-05
AFFX-CreX-3_at
20529.2
P
4.42873e-05
AFFX-DapX-5_at
4.98291
A
0.953533
AFFX-DapX-M_at
51.7164
A
0.250796
AFFX-DapX-3_at
68.7303
A
0.470241
AFFX-LysX-5_at
1.72565
A
0.904333
AFFX-LysX-M_at
95.3017
A
0.588627
AFFX-LysX-3_at
54.7415
A
0.139482
AFFX-PheX-5_at
2.82372
A
0.997977
AFFX-PheX-M_at
12.5268
A
0.860538
AFFX-PheX-3_at
20.1811
A
0.814869
AFFX-ThrX-5_at
56.7879
A
0.313723
AFFX-ThrX-M_at
29.6083
A
0.470241
Total number of rows:
57381
Table truncated, full table size
2162 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM267999.CEL.gz
4.6 Mb
(ftp)
(http)
CEL
GSM267999.CHP.gz
6.7 Mb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
Raw data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
