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Sample GSM267999 Query DataSets for GSM267999
Status Public on Mar 21, 2008
Title Green leaves in F9G RILs from parents lines
Sample type RNA
Source name Oryza sativa leaf from recombinant inbreed line, normal green
Organism Oryza sativa
Characteristics green leaf in the vegetative stage
Extracted molecule total RNA
Extraction protocol Total RNA was prepared with the RNeasy plant Mini Kit (Qiagen).
Label biotin
Label protocol Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description green leaf tip in the vegetative stage
Data processing GCOS1.2
Submission date Feb 26, 2008
Last update date Mar 20, 2008
Contact name Angeline Su
Organization name NCHU
Street address Kuo Kuang road
City Taichung
ZIP/Postal code 402
Country Taiwan
Platform ID GPL2025
Series (1)
GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 495.49 P 0.000753643
AFFX-BioB-M_at 525.287 P 0.000146581
AFFX-BioB-3_at 282.619 P 0.000296708
AFFX-BioC-5_at 1283.93 P 6.02111e-05
AFFX-BioC-3_at 902.472 P 4.42873e-05
AFFX-BioDn-5_at 1680.83 P 4.42873e-05
AFFX-BioDn-3_at 6963.44 P 5.16732e-05
AFFX-CreX-5_at 15348.8 P 4.42873e-05
AFFX-CreX-3_at 20529.2 P 4.42873e-05
AFFX-DapX-5_at 4.98291 A 0.953533
AFFX-DapX-M_at 51.7164 A 0.250796
AFFX-DapX-3_at 68.7303 A 0.470241
AFFX-LysX-5_at 1.72565 A 0.904333
AFFX-LysX-M_at 95.3017 A 0.588627
AFFX-LysX-3_at 54.7415 A 0.139482
AFFX-PheX-5_at 2.82372 A 0.997977
AFFX-PheX-M_at 12.5268 A 0.860538
AFFX-PheX-3_at 20.1811 A 0.814869
AFFX-ThrX-5_at 56.7879 A 0.313723
AFFX-ThrX-M_at 29.6083 A 0.470241

Total number of rows: 57381

Table truncated, full table size 2162 Kbytes.

Supplementary file Size Download File type/resource
GSM267999.CEL.gz 4.6 Mb (ftp)(http) CEL
GSM267999.CHP.gz 6.7 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file
Raw data provided as supplementary file

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