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Sample GSM2534706 Query DataSets for GSM2534706
Status Public on Mar 12, 2017
Title ChIP-seq from right lobe of liver (ENCLB177YYO)
Sample type SRA
Source name Homo sapiens right lobe of liver tissue female adult (53 years)
Organism Homo sapiens
Characteristics antibody: H3K27ac
tissue_type: right lobe of liver
biomaterial_type: tissue
description: i.e. REMC 2,3,4,5 and 16; EnTEX: Liver
biosample encode accession: ENCBS536THV (SAMN06464435)
dev stage: adult
Sex: female
donor_id: ENCDO793LXB
age: 53 year
lab: Bradley Bernstein, Broad
link: ENCBS536THV at ENCODE;
link: Derived from ENCODE donor ENCDO793LXB;
Extracted molecule genomic DNA
Extraction protocol general protocol:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
biological replicate number: 2
technical replicate number: 1
experiment encode accession: ENCSR981UJA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR276SJT
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB177YYO
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
Submission date Mar 12, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE96504 ChIP-seq from right lobe of liver (ENCSR981UJA)
BioSample SAMN06464435
SRA SRX2636558

Supplementary file Size Download File type/resource
GSM2534706_ENCFF071BQQ_peaks_hg19.bed.gz 2.2 Mb (ftp)(http) BED
GSM2534706_ENCFF084SZN_peaks_GRCh38.bed.gz 2.2 Mb (ftp)(http) BED
GSM2534706_ENCFF202GLA_fold_change_over_control_GRCh38.bigWig 425.0 Mb (ftp)(http) BIGWIG
GSM2534706_ENCFF541CSP_peaks_hg19.bigBed 5.8 Mb (ftp)(http) BIGBED
GSM2534706_ENCFF545VSZ_signal_p-value_GRCh38.bigWig 581.5 Mb (ftp)(http) BIGWIG
GSM2534706_ENCFF643MBP_fold_change_over_control_hg19.bigWig 422.0 Mb (ftp)(http) BIGWIG
GSM2534706_ENCFF793QBU_signal_p-value_hg19.bigWig 577.2 Mb (ftp)(http) BIGWIG
GSM2534706_ENCFF867XIG_peaks_GRCh38.bigBed 5.8 Mb (ftp)(http) BIGBED
GSM2534706_ENCLB177YYO_README.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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