GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM2534670

Query DataSets for GSM2534670

Status

Public on Mar 12, 2017

Title

ChIP-seq from KMS-11 (ENCLB067SIE)

Sample type

SRA

Source name

Homo sapiens KMS-11 immortalized cell line

Organism

Homo sapiens

Characteristics

antibody: H3K27ac
line: KMS-11
biomaterial_type: immortalized cell line
description: multiple myeloma
biosample encode accession: ENCBS682HMC (SAMN06464473)
dev stage: adult
Sex: female
age: 67 year
lab: Bradley Bernstein, Broad
link: ENCBS682HMC at ENCODE; https://www.encodeproject.org/ENCBS682HMC/
link: Derived from ENCODE donor ENCDO133EXU; https://www.encodeproject.org/ENCDO133EXU/
link: ENCODE dbxrefs Cellosaurus CVCL_2989; http://web.expasy.org/cellosaurus/CVCL_2989

Extracted molecule

genomic DNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2500

Description

https://www.encodeproject.org/experiments/ENCSR955IXZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR955IXZ
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR720GSE
encode release date: 2016-11-01
lab: Bradley Bernstein, Broad
library encode accession: ENCLB067SIE
size range: 200-600

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Mar 12, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL16791

Series (1)

GSE96488

ChIP-seq from KMS-11 (ENCSR955IXZ)

Relations

BioSample

SAMN06464473

SRA

SRX2636527

Supplementary file	Size	Download	File type/resource
GSM2534670_ENCFF063MQA_peaks_hg19.bigBed	2.7 Mb	(ftp)(http)	BIGBED
GSM2534670_ENCFF331BNA_signal_p-value_hg19.bigWig	1.1 Gb	(ftp)(http)	BIGWIG
GSM2534670_ENCFF374LZZ_fold_change_over_control_hg19.bigWig	1.0 Gb	(ftp)(http)	BIGWIG
GSM2534670_ENCFF428AQJ_peaks_hg19.bed.gz	860.6 Kb	(ftp)(http)	BED
GSM2534670_ENCFF614TWN_fold_change_over_control_GRCh38.bigWig	1.0 Gb	(ftp)(http)	BIGWIG
GSM2534670_ENCFF629BXX_peaks_GRCh38.bigBed	2.7 Mb	(ftp)(http)	BIGBED
GSM2534670_ENCFF976HYV_peaks_GRCh38.bed.gz	862.0 Kb	(ftp)(http)	BED
GSM2534670_ENCFF977HJW_signal_p-value_GRCh38.bigWig	1021.3 Mb	(ftp)(http)	BIGWIG
GSM2534670_ENCLB067SIE_README.txt.gz	1.7 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file