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Sample GSM2534614 Query DataSets for GSM2534614
Status Public on Mar 12, 2017
Title ChIP-seq from bipolar spindle neuron (ENCLB946YYC)
Sample type SRA
Source name Homo sapiens bipolar spindle neuron in vitro differentiated cells male adult (53 years) derived from induced pluripotent stem cell
Organism Homo sapiens
Characteristics antibody: H3K27ac
cell_type: bipolar spindle neuron
biomaterial_type: in vitro differentiated cells
description: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).
biosample encode accession: ENCBS369AAA (SAMN04284357)
age: 53 year
donor_id: ENCDO336AAA
dev stage: adult
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS369AAA at ENCODE;
link: Derived from ENCODE donor ENCDO336AAA;
Extracted molecule genomic DNA
Extraction protocol general protocol:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
biological replicate number: 2
technical replicate number: 1
experiment encode accession: ENCSR905TYC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR001KCX
encode release date: 2016-05-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB946YYC
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
Submission date Mar 12, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE96463 ChIP-seq from bipolar spindle neuron (ENCSR905TYC)
BioSample SAMN04284357
SRA SRX2636470

Supplementary file Size Download File type/resource
GSM2534614_ENCFF046COK_peaks_GRCh38.bed.gz 2.2 Mb (ftp)(http) BED
GSM2534614_ENCFF223QVD_signal_p-value_GRCh38.bigWig 2.0 Gb (ftp)(http) BIGWIG
GSM2534614_ENCFF355LAI_fold_change_over_control_GRCh38.bigWig 1.6 Gb (ftp)(http) BIGWIG
GSM2534614_ENCFF505YBR_fold_change_over_control_hg19.bigWig 1.6 Gb (ftp)(http) BIGWIG
GSM2534614_ENCFF592OVI_peaks_GRCh38.bigBed 6.1 Mb (ftp)(http) BIGBED
GSM2534614_ENCFF627VFW_peaks_hg19.bed.gz 2.2 Mb (ftp)(http) BED
GSM2534614_ENCFF825GKR_signal_p-value_hg19.bigWig 2.0 Gb (ftp)(http) BIGWIG
GSM2534614_ENCFF955UHV_peaks_hg19.bigBed 6.1 Mb (ftp)(http) BIGBED
GSM2534614_ENCLB946YYC_README.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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