|
| Status |
Public on Mar 12, 2017 |
| Title |
ChIP-seq from bipolar spindle neuron (ENCLB946YYC) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens bipolar spindle neuron in vitro differentiated cells male adult (53 years) derived from induced pluripotent stem cell
|
| Organism |
Homo sapiens |
| Characteristics |
antibody: H3K27ac
cell_type: bipolar spindle neuron
biomaterial_type: in vitro differentiated cells
description: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).
biosample encode accession: ENCBS369AAA (SAMN04284357)
age: 53 year
donor_id: ENCDO336AAA
dev stage: adult
Sex: male
lab: Thomas Gingeras, CSHL
link: ENCBS369AAA at ENCODE; https://www.encodeproject.org/ENCBS369AAA/
link: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR905TYC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR905TYC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR001KCX
encode release date: 2016-05-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB946YYC
size range: 200-600
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Mar 12, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL16791 |
| Series (1) |
| GSE96463 |
ChIP-seq from bipolar spindle neuron (ENCSR905TYC) |
|
| Relations |
| BioSample |
SAMN04284357 |
| SRA |
SRX2636470 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2534614_ENCFF046COK_peaks_GRCh38.bed.gz |
2.2 Mb |
(ftp)(http) |
BED |
| GSM2534614_ENCFF223QVD_signal_p-value_GRCh38.bigWig |
2.0 Gb |
(ftp)(http) |
BIGWIG |
| GSM2534614_ENCFF355LAI_fold_change_over_control_GRCh38.bigWig |
1.6 Gb |
(ftp)(http) |
BIGWIG |
| GSM2534614_ENCFF505YBR_fold_change_over_control_hg19.bigWig |
1.6 Gb |
(ftp)(http) |
BIGWIG |
| GSM2534614_ENCFF592OVI_peaks_GRCh38.bigBed |
6.1 Mb |
(ftp)(http) |
BIGBED |
| GSM2534614_ENCFF627VFW_peaks_hg19.bed.gz |
2.2 Mb |
(ftp)(http) |
BED |
| GSM2534614_ENCFF825GKR_signal_p-value_hg19.bigWig |
2.0 Gb |
(ftp)(http) |
BIGWIG |
| GSM2534614_ENCFF955UHV_peaks_hg19.bigBed |
6.1 Mb |
(ftp)(http) |
BIGBED |
| GSM2534614_ENCLB946YYC_README.txt.gz |
1.7 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
| Processed data provided as supplementary file |
