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GEO accession:
Sample GSM2534549
Query DataSets for GSM2534549
Status
Public on Mar 12, 2017
Title
ChIP-seq from cardiac muscle cell (ENCLB142HEK)
Sample type
SRA
Source name
Homo sapiens cardiac muscle in vitro differentiated cells fetal
Organism
Homo sapiens
Characteristics
antibody: Control
cell_type: cardiac muscle cell
biomaterial_type: in vitro differentiated cells
biosample encode accession: ENCBS343AKO (SAMN05897106)
age: unknown
dev stage: fetal
donor_id: ENCDO924HBJ
Sex: not collected
lab: John Stamatoyannopoulos, UW
link: ENCBS343AKO at ENCODE;
https://www.encodeproject.org/ENCBS343AKO/
link: Derived from ENCODE donor ENCDO924HBJ;
https://www.encodeproject.org/ENCDO924HBJ/
Extracted molecule
genomic DNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/69af4be8-3a50-4819-9642-ffb6db747469/@@download/attachment/whole_cell_extract_library_construction_v1.0.pdf
general protocol:
https://www.encodeproject.org/documents/69af4be8-3a50-4819-9642-ffb6db747469/@@download/attachment/whole_cell_extract_library_construction_v1.0.pdf
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina HiSeq 2500
Description
https://www.encodeproject.org/experiments/ENCSR867SJE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR867SJE
assay title: ChIP-seq
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB142HEK
size range: 200-600
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Mar 12, 2017
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL16791
Series (1)
GSE96431
ChIP-seq from cardiac muscle cell (ENCSR867SJE)
Relations
BioSample
SAMN05897106
SRA
SRX2636408
Supplementary file
Size
Download
File type/resource
GSM2534549_ENCLB142HEK_README.txt.gz
426 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file
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