|
| Status |
Public on Mar 12, 2017 |
| Title |
ChIP-seq from neuroepithelial stem cell (ENCLB588HPA) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens neuroepithelial stem in vitro differentiated cells female embryo (5 days) derived from H9 stably expressing C-terminal eGFP-HES5 fusion protein
|
| Organism |
Homo sapiens |
| Characteristics |
antibody: H3K27ac
cell_type: neuroepithelial stem cell
biomaterial_type: in vitro differentiated cells
description: Neuroepithelial cells were collected at day 12 of differentiation (see protocol)
biosample encode accession: ENCBS562NPI (SAMN06464442)
dev stage: embryonic
Sex: female
donor_id: ENCDO222AAA
age: 5 day
health state: healthy
lab: Bradley Bernstein, Broad
link: ENCBS562NPI at ENCODE; https://www.encodeproject.org/ENCBS562NPI/
link: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR842NGQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR842NGQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR803UDX
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB588HPA
size range: 200-600
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Mar 12, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL16791 |
| Series (1) |
| GSE96414 |
ChIP-seq from neuroepithelial stem cell (ENCSR842NGQ) |
|
| Relations |
| BioSample |
SAMN06464442 |
| SRA |
SRX2636472 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2534515_ENCFF161KCR_peaks_hg19.bigBed |
5.8 Mb |
(ftp)(http) |
BIGBED |
| GSM2534515_ENCFF168FUG_peaks_GRCh38.bed.gz |
1.9 Mb |
(ftp)(http) |
BED |
| GSM2534515_ENCFF284XVQ_fold_change_over_control_GRCh38.bigWig |
791.0 Mb |
(ftp)(http) |
BIGWIG |
| GSM2534515_ENCFF310CII_peaks_hg19.bed.gz |
1.9 Mb |
(ftp)(http) |
BED |
| GSM2534515_ENCFF417TZJ_signal_p-value_GRCh38.bigWig |
987.5 Mb |
(ftp)(http) |
BIGWIG |
| GSM2534515_ENCFF461CTB_fold_change_over_control_hg19.bigWig |
792.9 Mb |
(ftp)(http) |
BIGWIG |
| GSM2534515_ENCFF584LNY_signal_p-value_hg19.bigWig |
994.7 Mb |
(ftp)(http) |
BIGWIG |
| GSM2534515_ENCFF743RAE_peaks_GRCh38.bigBed |
5.6 Mb |
(ftp)(http) |
BIGBED |
| GSM2534515_ENCLB588HPA_README.txt.gz |
1.7 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
| Processed data provided as supplementary file |
