|
| Status |
Public on Mar 12, 2017 |
| Title |
ChIP-seq from PC-3 (ENCLB560SRL) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens PC-3 immortalized cell line
|
| Organism |
Homo sapiens |
| Characteristics |
antibody: H3K27ac
line: PC-3
biomaterial_type: immortalized cell line
description: prostate cancer cell line
biosample encode accession: ENCBS451OVM (SAMN06464412)
dev stage: adult
Sex: male
age: 62 year
health state: grade IV, adenocarcinoma
passage number: 3
lab: Bradley Bernstein, Broad
link: ENCBS451OVM at ENCODE; https://www.encodeproject.org/ENCBS451OVM/
link: Derived from ENCODE donor ENCDO349AAA; https://www.encodeproject.org/ENCDO349AAA/
link: ENCODE dbxrefs Cellosaurus CVCL_0035; http://web.expasy.org/cellosaurus/CVCL_0035
link: ATCC sample source; http://www.atcc.org/products/all/CRL-1435.aspx
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
extraction method: see document
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR826UTD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR826UTD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR328AHC
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB560SRL
size range: 300-600
nucleic acid starting quantity: 15.606
nucleic acid starting quantity units: ng
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Mar 12, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL11154 |
| Series (1) |
| GSE96399 |
ChIP-seq from PC-3 (ENCSR826UTD) |
|
| Relations |
| BioSample |
SAMN06464412 |
| SRA |
SRX2636581 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2534487_ENCFF044WKK_peaks_hg19.bigBed |
5.1 Mb |
(ftp)(http) |
BIGBED |
| GSM2534487_ENCFF107PAA_signal_p-value_hg19.bigWig |
1.1 Gb |
(ftp)(http) |
BIGWIG |
| GSM2534487_ENCFF257KFY_peaks_GRCh38.bigBed |
5.1 Mb |
(ftp)(http) |
BIGBED |
| GSM2534487_ENCFF291LDL_signal_p-value_GRCh38.bigWig |
961.0 Mb |
(ftp)(http) |
BIGWIG |
| GSM2534487_ENCFF542RGX_fold_change_over_control_GRCh38.bigWig |
786.5 Mb |
(ftp)(http) |
BIGWIG |
| GSM2534487_ENCFF711SWW_peaks_hg19.bed.gz |
1.9 Mb |
(ftp)(http) |
BED |
| GSM2534487_ENCFF777WYG_peaks_GRCh38.bed.gz |
1.9 Mb |
(ftp)(http) |
BED |
| GSM2534487_ENCFF812NXY_fold_change_over_control_hg19.bigWig |
785.4 Mb |
(ftp)(http) |
BIGWIG |
| GSM2534487_ENCLB560SRL_README.txt.gz |
1.7 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
| Processed data provided as supplementary file |
