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Sample GSM2534418 Query DataSets for GSM2534418
Status Public on Mar 12, 2017
Title ChIP-seq from PC-9 (ENCLB187KMZ)
Sample type SRA
Source name Homo sapiens PC-9 immortalized cell line
Organism Homo sapiens
Characteristics antibody: H3K27ac
line: PC-9
biomaterial_type: immortalized cell line
description: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding
biosample encode accession: ENCBS987JQH (SAMN06464582)
dev stage: unknown
Sex: not collected
age: unknown
lab: Bradley Bernstein, Broad
link: ENCBS987JQH at ENCODE;
link: Derived from ENCODE donor ENCDO647UHQ;
link: ENCODE dbxrefs Cellosaurus CVCL_B260;
Extracted molecule genomic DNA
Extraction protocol general protocol:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
biological replicate number: 2
technical replicate number: 1
experiment encode accession: ENCSR769FOC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB187KMZ
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
Submission date Mar 12, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE96366 ChIP-seq from PC-9 (ENCSR769FOC)
BioSample SAMN06464582
SRA SRX2636287

Supplementary file Size Download File type/resource
GSM2534418_ENCFF031ZNH_peaks_hg19.bed.gz 1.6 Mb (ftp)(http) BED
GSM2534418_ENCFF187GWT_signal_p-value_GRCh38.bigWig 1.5 Gb (ftp)(http) BIGWIG
GSM2534418_ENCFF343ZNB_signal_p-value_hg19.bigWig 1.4 Gb (ftp)(http) BIGWIG
GSM2534418_ENCFF344GUG_peaks_GRCh38.bed.gz 1.6 Mb (ftp)(http) BED
GSM2534418_ENCFF530JLU_fold_change_over_control_GRCh38.bigWig 1.4 Gb (ftp)(http) BIGWIG
GSM2534418_ENCFF533YVZ_peaks_hg19.bigBed 4.2 Mb (ftp)(http) BIGBED
GSM2534418_ENCFF784QPW_fold_change_over_control_hg19.bigWig 1.4 Gb (ftp)(http) BIGWIG
GSM2534418_ENCFF886XFH_peaks_GRCh38.bigBed 4.2 Mb (ftp)(http) BIGBED
GSM2534418_ENCLB187KMZ_README.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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