|
| Status |
Public on Mar 12, 2017 |
| Title |
ChIP-seq from MM.1S (ENCLB399ALW) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens MM.1S immortalized cell line
|
| Organism |
Homo sapiens |
| Characteristics |
antibody: H3K27ac
line: MM.1S
biomaterial_type: immortalized cell line
description: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone
biosample encode accession: ENCBS241TLI (SAMN06464353)
dev stage: adult
Sex: female
age: 42 year
health state: immunoglobulin A lambda myeloma
lab: Bradley Bernstein, Broad
link: ENCBS241TLI at ENCODE; https://www.encodeproject.org/ENCBS241TLI/
link: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/
link: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
general protocol: https://www.encodeproject.org/documents/18f0d330-5799-45f7-babe-7728dfbd1103/@@download/attachment/Epigenomics_Mag%20Bead_ChIP_Protocol_v01.4_exp.pdf
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR758OEC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR758OEC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB399ALW
size range: 300-600
nucleic acid starting quantity: 82.62
nucleic acid starting quantity units: ng
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Mar 12, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL16791 |
| Series (1) |
| GSE96358 |
ChIP-seq from MM.1S (ENCSR758OEC) |
|
| Relations |
| BioSample |
SAMN06464353 |
| SRA |
SRX2636275 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2534402_ENCFF284VCP_signal_p-value_hg19.bigWig |
776.9 Mb |
(ftp)(http) |
BIGWIG |
| GSM2534402_ENCFF363EKN_peaks_GRCh38.bed.gz |
759.4 Kb |
(ftp)(http) |
BED |
| GSM2534402_ENCFF368KRS_fold_change_over_control_hg19.bigWig |
690.6 Mb |
(ftp)(http) |
BIGWIG |
| GSM2534402_ENCFF375HHS_peaks_GRCh38.bigBed |
2.1 Mb |
(ftp)(http) |
BIGBED |
| GSM2534402_ENCFF633ZWM_signal_p-value_GRCh38.bigWig |
681.8 Mb |
(ftp)(http) |
BIGWIG |
| GSM2534402_ENCFF725UVP_fold_change_over_control_GRCh38.bigWig |
696.3 Mb |
(ftp)(http) |
BIGWIG |
| GSM2534402_ENCFF891APS_peaks_hg19.bigBed |
2.1 Mb |
(ftp)(http) |
BIGBED |
| GSM2534402_ENCFF941JBN_peaks_hg19.bed.gz |
773.7 Kb |
(ftp)(http) |
BED |
| GSM2534402_ENCLB399ALW_README.txt.gz |
1.7 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
| Processed data provided as supplementary file |
