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Sample GSM2534402 Query DataSets for GSM2534402
Status Public on Mar 12, 2017
Title ChIP-seq from MM.1S (ENCLB399ALW)
Sample type SRA
Source name Homo sapiens MM.1S immortalized cell line
Organism Homo sapiens
Characteristics antibody: H3K27ac
line: MM.1S
biomaterial_type: immortalized cell line
description: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone
biosample encode accession: ENCBS241TLI (SAMN06464353)
dev stage: adult
Sex: female
age: 42 year
health state: immunoglobulin A lambda myeloma
lab: Bradley Bernstein, Broad
link: ENCBS241TLI at ENCODE;
link: Derived from ENCODE donor ENCDO697GBW;
link: ENCODE dbxrefs Cellosaurus CVCL_8792;
Extracted molecule genomic DNA
Extraction protocol general protocol:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
experiment encode accession: ENCSR758OEC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB399ALW
size range: 300-600
nucleic acid starting quantity: 82.62
nucleic acid starting quantity units: ng
Data processing See GSM*_README.txt supplementary file linked below
Submission date Mar 12, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE96358 ChIP-seq from MM.1S (ENCSR758OEC)
BioSample SAMN06464353
SRA SRX2636275

Supplementary file Size Download File type/resource
GSM2534402_ENCFF284VCP_signal_p-value_hg19.bigWig 776.9 Mb (ftp)(http) BIGWIG
GSM2534402_ENCFF363EKN_peaks_GRCh38.bed.gz 759.4 Kb (ftp)(http) BED
GSM2534402_ENCFF368KRS_fold_change_over_control_hg19.bigWig 690.6 Mb (ftp)(http) BIGWIG
GSM2534402_ENCFF375HHS_peaks_GRCh38.bigBed 2.1 Mb (ftp)(http) BIGBED
GSM2534402_ENCFF633ZWM_signal_p-value_GRCh38.bigWig 681.8 Mb (ftp)(http) BIGWIG
GSM2534402_ENCFF725UVP_fold_change_over_control_GRCh38.bigWig 696.3 Mb (ftp)(http) BIGWIG
GSM2534402_ENCFF891APS_peaks_hg19.bigBed 2.1 Mb (ftp)(http) BIGBED
GSM2534402_ENCFF941JBN_peaks_hg19.bed.gz 773.7 Kb (ftp)(http) BED
GSM2534402_ENCLB399ALW_README.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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