|
| Status |
Public on Mar 12, 2017 |
| Title |
ChIP-seq from gastrocnemius medialis (ENCLB820SST) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens gastrocnemius medialis tissue female adult (53 years)
|
| Organism |
Homo sapiens |
| Characteristics |
antibody: H3K27ac
tissue_type: gastrocnemius medialis
biomaterial_type: tissue
description: i.e. REMC 6, 13, 14 and 15; EnTEX: Muscle - Skeletal
biosample encode accession: ENCBS866HOM (SAMN06464542)
dev stage: adult
Sex: female
donor_id: ENCDO793LXB
age: 53 year
lab: Bradley Bernstein, Broad
link: ENCBS866HOM at ENCODE; https://www.encodeproject.org/ENCBS866HOM/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR736ALU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR736ALU
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR001UFN
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB820SST
size range: 200-600
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Mar 12, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL16791 |
| Series (1) |
| GSE96345 |
ChIP-seq from gastrocnemius medialis (ENCSR736ALU) |
|
| Relations |
| BioSample |
SAMN06464542 |
| SRA |
SRX2636236 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2534375_ENCFF147BHB_peaks_hg19.bed.gz |
1.7 Mb |
(ftp)(http) |
BED |
| GSM2534375_ENCFF210XHN_peaks_GRCh38.bigBed |
4.4 Mb |
(ftp)(http) |
BIGBED |
| GSM2534375_ENCFF503EYS_fold_change_over_control_hg19.bigWig |
587.3 Mb |
(ftp)(http) |
BIGWIG |
| GSM2534375_ENCFF513EIF_fold_change_over_control_GRCh38.bigWig |
585.5 Mb |
(ftp)(http) |
BIGWIG |
| GSM2534375_ENCFF809YBH_signal_p-value_hg19.bigWig |
668.2 Mb |
(ftp)(http) |
BIGWIG |
| GSM2534375_ENCFF840OYT_peaks_GRCh38.bed.gz |
1.7 Mb |
(ftp)(http) |
BED |
| GSM2534375_ENCFF897XJV_peaks_hg19.bigBed |
4.4 Mb |
(ftp)(http) |
BIGBED |
| GSM2534375_ENCFF979ACK_signal_p-value_GRCh38.bigWig |
749.2 Mb |
(ftp)(http) |
BIGWIG |
| GSM2534375_ENCLB820SST_README.txt.gz |
1.7 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
| Processed data provided as supplementary file |
