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Sample GSM2534375 Query DataSets for GSM2534375
Status Public on Mar 12, 2017
Title ChIP-seq from gastrocnemius medialis (ENCLB820SST)
Sample type SRA
 
Source name Homo sapiens gastrocnemius medialis tissue female adult (53 years)
Organism Homo sapiens
Characteristics antibody: H3K27ac
tissue_type: gastrocnemius medialis
biomaterial_type: tissue
description: i.e. REMC 6, 13, 14 and 15; EnTEX: Muscle - Skeletal
biosample encode accession: ENCBS866HOM (SAMN06464542)
dev stage: adult
Sex: female
donor_id: ENCDO793LXB
age: 53 year
lab: Bradley Bernstein, Broad
link: ENCBS866HOM at ENCODE; https://www.encodeproject.org/ENCBS866HOM/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR736ALU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR736ALU
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR001UFN
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB820SST
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Mar 12, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE96345 ChIP-seq from gastrocnemius medialis (ENCSR736ALU)
Relations
BioSample SAMN06464542
SRA SRX2636236

Supplementary file Size Download File type/resource
GSM2534375_ENCFF147BHB_peaks_hg19.bed.gz 1.7 Mb (ftp)(http) BED
GSM2534375_ENCFF210XHN_peaks_GRCh38.bigBed 4.4 Mb (ftp)(http) BIGBED
GSM2534375_ENCFF503EYS_fold_change_over_control_hg19.bigWig 587.3 Mb (ftp)(http) BIGWIG
GSM2534375_ENCFF513EIF_fold_change_over_control_GRCh38.bigWig 585.5 Mb (ftp)(http) BIGWIG
GSM2534375_ENCFF809YBH_signal_p-value_hg19.bigWig 668.2 Mb (ftp)(http) BIGWIG
GSM2534375_ENCFF840OYT_peaks_GRCh38.bed.gz 1.7 Mb (ftp)(http) BED
GSM2534375_ENCFF897XJV_peaks_hg19.bigBed 4.4 Mb (ftp)(http) BIGBED
GSM2534375_ENCFF979ACK_signal_p-value_GRCh38.bigWig 749.2 Mb (ftp)(http) BIGWIG
GSM2534375_ENCLB820SST_README.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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