|
Status |
Public on Mar 12, 2017 |
Title |
ChIP-seq from gastrocnemius medialis (ENCLB820SST) |
Sample type |
SRA |
|
|
Source name |
Homo sapiens gastrocnemius medialis tissue female adult (53 years)
|
Organism |
Homo sapiens |
Characteristics |
antibody: H3K27ac tissue_type: gastrocnemius medialis biomaterial_type: tissue description: i.e. REMC 6, 13, 14 and 15; EnTEX: Muscle - Skeletal biosample encode accession: ENCBS866HOM (SAMN06464542) dev stage: adult Sex: female donor_id: ENCDO793LXB age: 53 year lab: Bradley Bernstein, Broad link: ENCBS866HOM at ENCODE; https://www.encodeproject.org/ENCBS866HOM/ link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
|
Extracted molecule |
genomic DNA |
Extraction protocol |
general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina HiSeq 2500 |
|
|
Description |
https://www.encodeproject.org/experiments/ENCSR736ALU/ *************** biological replicate number: 1 technical replicate number: 1 description: experiment encode accession: ENCSR736ALU assay title: ChIP-seq assembly: hg19, GRCh38 possible controls: ENCSR001UFN encode release date: 2016-11-04 lab: Bradley Bernstein, Broad library encode accession: ENCLB820SST size range: 200-600
|
Data processing |
See GSM*_README.txt supplementary file linked below
|
|
|
Submission date |
Mar 12, 2017 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL16791 |
Series (1) |
GSE96345 |
ChIP-seq from gastrocnemius medialis (ENCSR736ALU) |
|
Relations |
BioSample |
SAMN06464542 |
SRA |
SRX2636236 |
Supplementary file |
Size |
Download |
File type/resource |
GSM2534375_ENCFF147BHB_peaks_hg19.bed.gz |
1.7 Mb |
(ftp)(http) |
BED |
GSM2534375_ENCFF210XHN_peaks_GRCh38.bigBed |
4.4 Mb |
(ftp)(http) |
BIGBED |
GSM2534375_ENCFF503EYS_fold_change_over_control_hg19.bigWig |
587.3 Mb |
(ftp)(http) |
BIGWIG |
GSM2534375_ENCFF513EIF_fold_change_over_control_GRCh38.bigWig |
585.5 Mb |
(ftp)(http) |
BIGWIG |
GSM2534375_ENCFF809YBH_signal_p-value_hg19.bigWig |
668.2 Mb |
(ftp)(http) |
BIGWIG |
GSM2534375_ENCFF840OYT_peaks_GRCh38.bed.gz |
1.7 Mb |
(ftp)(http) |
BED |
GSM2534375_ENCFF897XJV_peaks_hg19.bigBed |
4.4 Mb |
(ftp)(http) |
BIGBED |
GSM2534375_ENCFF979ACK_signal_p-value_GRCh38.bigWig |
749.2 Mb |
(ftp)(http) |
BIGWIG |
GSM2534375_ENCLB820SST_README.txt.gz |
1.7 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
Processed data provided as supplementary file |