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Sample GSM2534371 Query DataSets for GSM2534371
Status Public on Mar 12, 2017
Title ChIP-seq from smooth muscle cell (ENCLB927NBD)
Sample type SRA
 
Source name Homo sapiens smooth muscle in vitro differentiated cells female embryo (5 days) derived from H9
Organism Homo sapiens
Characteristics antibody: Control
cell_type: smooth muscle cell
biomaterial_type: in vitro differentiated cells
description: Frozen or fixed, in vitro differentiated smooth muscle cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia
biosample encode accession: ENCBS780PCJ (SAMN04284476)
age: 5 day
donor_id: ENCDO222AAA
dev stage: embryonic
Sex: female
health state: healthy
lab: Richard Myers, HAIB
link: ENCBS780PCJ at ENCODE; https://www.encodeproject.org/ENCBS780PCJ/
link: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/
link: differentiation protocol; https://www.encodeproject.org/documents/c7707280-f681-4c88-9b16-9271082c8b32/@@download/attachment/SESCC_ENCODE_differentiation_SOPs_May30_2014.pdf
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR729MRJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR729MRJ
assay title: ChIP-seq
encode release date: 2016-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB927NBD
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Mar 12, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE96343 ChIP-seq from smooth muscle cell (ENCSR729MRJ)
Relations
BioSample SAMN04284476
SRA SRX2636254

Supplementary file Size Download File type/resource
GSM2534371_ENCLB927NBD_README.txt.gz 429 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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