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Sample GSM2534361

Query DataSets for GSM2534361

Status

Public on Mar 12, 2017

Title

ChIP-seq from KOPT-K1 (ENCLB816SDC)

Sample type

SRA

Source name

Homo sapiens KOPT-K1 immortalized cell line

Organism

Homo sapiens

Characteristics

antibody: H3K27ac
line: KOPT-K1
biomaterial_type: immortalized cell line
description: cells from Birgit; a human T-ALL cell line with a chromosome translocation breakpoint at t(11;14)(p13;q11) affecting the putative oncoprotein
biosample encode accession: ENCBS345YKN (SAMN06464380)
dev stage: unknown
Sex: not collected
age: unknown
lab: Bradley Bernstein, Broad
link: ENCBS345YKN at ENCODE; https://www.encodeproject.org/ENCBS345YKN/
link: Derived from ENCODE donor ENCDO568LPD; https://www.encodeproject.org/ENCDO568LPD/
link: ENCODE dbxrefs Cellosaurus CVCL_4965; http://web.expasy.org/cellosaurus/CVCL_4965

Extracted molecule

genomic DNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/97a73f1c-6372-4dd2-b275-0b8e855cbd5a/@@download/attachment/Cell_Paper_ChIP_protocol.pdf

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2000

Description

https://www.encodeproject.org/experiments/ENCSR719FEJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR719FEJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR255BOF
encode release date: 2016-11-17
lab: Bradley Bernstein, Broad
library encode accession: ENCLB816SDC
size range: 200-600

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Mar 12, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL11154

Series (1)

GSE96338

ChIP-seq from KOPT-K1 (ENCSR719FEJ)

Relations

BioSample

SAMN06464380

SRA

SRX2636269

Supplementary file	Size	Download	File type/resource
GSM2534361_ENCFF035ULS_signal_p-value_hg19.bigWig	1.0 Gb	(ftp)(http)	BIGWIG
GSM2534361_ENCFF152TRY_fold_change_over_control_hg19.bigWig	439.1 Mb	(ftp)(http)	BIGWIG
GSM2534361_ENCFF159XFU_peaks_GRCh38.bigBed	3.2 Mb	(ftp)(http)	BIGBED
GSM2534361_ENCFF285SGU_peaks_GRCh38.bed.gz	1.3 Mb	(ftp)(http)	BED
GSM2534361_ENCFF485BON_signal_p-value_GRCh38.bigWig	1.0 Gb	(ftp)(http)	BIGWIG
GSM2534361_ENCFF558QMH_peaks_hg19.bigBed	3.2 Mb	(ftp)(http)	BIGBED
GSM2534361_ENCFF765DZN_peaks_hg19.bed.gz	1.3 Mb	(ftp)(http)	BED
GSM2534361_ENCFF777VPO_fold_change_over_control_GRCh38.bigWig	438.6 Mb	(ftp)(http)	BIGWIG
GSM2534361_ENCLB816SDC_README.txt.gz	1.8 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file