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Sample GSM2534361 Query DataSets for GSM2534361
Status Public on Mar 12, 2017
Title ChIP-seq from KOPT-K1 (ENCLB816SDC)
Sample type SRA
Source name Homo sapiens KOPT-K1 immortalized cell line
Organism Homo sapiens
Characteristics antibody: H3K27ac
line: KOPT-K1
biomaterial_type: immortalized cell line
description: cells from Birgit; a human T-ALL cell line with a chromosome translocation breakpoint at t(11;14)(p13;q11) affecting the putative oncoprotein
biosample encode accession: ENCBS345YKN (SAMN06464380)
dev stage: unknown
Sex: not collected
age: unknown
lab: Bradley Bernstein, Broad
link: ENCBS345YKN at ENCODE;
link: Derived from ENCODE donor ENCDO568LPD;
link: ENCODE dbxrefs Cellosaurus CVCL_4965;
Extracted molecule genomic DNA
Extraction protocol general protocol:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
biological replicate number: 2
technical replicate number: 1
experiment encode accession: ENCSR719FEJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR255BOF
encode release date: 2016-11-17
lab: Bradley Bernstein, Broad
library encode accession: ENCLB816SDC
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
Submission date Mar 12, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE96338 ChIP-seq from KOPT-K1 (ENCSR719FEJ)
BioSample SAMN06464380
SRA SRX2636269

Supplementary file Size Download File type/resource
GSM2534361_ENCFF035ULS_signal_p-value_hg19.bigWig 1.0 Gb (ftp)(http) BIGWIG
GSM2534361_ENCFF152TRY_fold_change_over_control_hg19.bigWig 439.1 Mb (ftp)(http) BIGWIG
GSM2534361_ENCFF159XFU_peaks_GRCh38.bigBed 3.2 Mb (ftp)(http) BIGBED
GSM2534361_ENCFF285SGU_peaks_GRCh38.bed.gz 1.3 Mb (ftp)(http) BED
GSM2534361_ENCFF485BON_signal_p-value_GRCh38.bigWig 1.0 Gb (ftp)(http) BIGWIG
GSM2534361_ENCFF558QMH_peaks_hg19.bigBed 3.2 Mb (ftp)(http) BIGBED
GSM2534361_ENCFF765DZN_peaks_hg19.bed.gz 1.3 Mb (ftp)(http) BED
GSM2534361_ENCFF777VPO_fold_change_over_control_GRCh38.bigWig 438.6 Mb (ftp)(http) BIGWIG
GSM2534361_ENCLB816SDC_README.txt.gz 1.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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