NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2534359 Query DataSets for GSM2534359
Status Public on Mar 12, 2017
Title ChIP-seq from vagina (ENCLB777PWZ)
Sample type SRA
 
Source name Homo sapiens vagina tissue female adult (53 years)
Organism Homo sapiens
Characteristics antibody: H3K27ac
tissue_type: vagina
biomaterial_type: tissue
description: EnTEX: Vagina
biosample encode accession: ENCBS047TWL (SAMN06464301)
dev stage: adult
Sex: female
donor_id: ENCDO793LXB
age: 53 year
lab: Bradley Bernstein, Broad
link: ENCBS047TWL at ENCODE; https://www.encodeproject.org/ENCBS047TWL/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR718BTD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR718BTD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR620XWM
encode release date: 2016-11-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB777PWZ
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Mar 12, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE96337 ChIP-seq from vagina (ENCSR718BTD)
Relations
BioSample SAMN06464301
SRA SRX2636246

Supplementary file Size Download File type/resource
GSM2534359_ENCFF366WEV_peaks_hg19.bigBed 7.6 Mb (ftp)(http) BIGBED
GSM2534359_ENCFF392CQX_fold_change_over_control_hg19.bigWig 667.0 Mb (ftp)(http) BIGWIG
GSM2534359_ENCFF490CJQ_signal_p-value_GRCh38.bigWig 800.0 Mb (ftp)(http) BIGWIG
GSM2534359_ENCFF506DOC_fold_change_over_control_GRCh38.bigWig 665.7 Mb (ftp)(http) BIGWIG
GSM2534359_ENCFF721GVA_peaks_GRCh38.bed.gz 2.9 Mb (ftp)(http) BED
GSM2534359_ENCFF785KPK_signal_p-value_hg19.bigWig 774.1 Mb (ftp)(http) BIGWIG
GSM2534359_ENCFF958WWY_peaks_GRCh38.bigBed 7.6 Mb (ftp)(http) BIGBED
GSM2534359_ENCFF971RDM_peaks_hg19.bed.gz 2.9 Mb (ftp)(http) BED
GSM2534359_ENCLB777PWZ_README.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap