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GEO accession:
Sample GSM2534258
Query DataSets for GSM2534258
Status
Public on Mar 12, 2017
Title
ChIP-seq from esophagus squamous epithelium (ENCLB358KPP)
Sample type
SRA
Source name
Homo sapiens esophagus squamous epithelium tissue female adult (53 years)
Organism
Homo sapiens
Characteristics
antibody: Control
tissue_type: esophagus squamous epithelium
biomaterial_type: tissue
description: EnTEX: Esophagus - Mucosa
biosample encode accession: ENCBS054JUC (SAMN06464306)
dev stage: adult
Sex: female
donor_id: ENCDO793LXB
age: 53 year
lab: Bradley Bernstein, Broad
link: ENCBS054JUC at ENCODE;
https://www.encodeproject.org/ENCBS054JUC/
link: Derived from ENCODE donor ENCDO793LXB;
https://www.encodeproject.org/ENCDO793LXB/
Extracted molecule
genomic DNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/69af4be8-3a50-4819-9642-ffb6db747469/@@download/attachment/whole_cell_extract_library_construction_v1.0.pdf
general protocol:
https://www.encodeproject.org/documents/69af4be8-3a50-4819-9642-ffb6db747469/@@download/attachment/whole_cell_extract_library_construction_v1.0.pdf
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina HiSeq 2500
Description
https://www.encodeproject.org/experiments/ENCSR652EPR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR652EPR
assay title: ChIP-seq
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB358KPP
size range: 200-600
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Mar 12, 2017
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL16791
Series (1)
GSE96289
ChIP-seq from esophagus squamous epithelium (ENCSR652EPR)
Relations
BioSample
SAMN06464306
SRA
SRX2636115
Supplementary file
Size
Download
File type/resource
GSM2534258_ENCLB358KPP_README.txt.gz
345 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file
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