|
| Status |
Public on Mar 12, 2017 |
| Title |
ChIP-seq from Loucy (ENCLB703DVX) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens Loucy immortalized cell line
|
| Organism |
Homo sapiens |
| Characteristics |
antibody: Control
line: Loucy
biomaterial_type: immortalized cell line
description: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.
biosample encode accession: ENCBS080PZG (SAMN06464314)
dev stage: adult
Sex: female
age: 38 year
health state: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629
lab: Bradley Bernstein, Broad
link: ENCBS080PZG at ENCODE; https://www.encodeproject.org/ENCBS080PZG/
link: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/
link: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380
link: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
not provided
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR648HLP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR648HLP
assay title: ChIP-seq
encode release date: 2014-11-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB703DVX
size range: 200-600
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Mar 12, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL11154 |
| Series (1) |
| GSE96286 |
ChIP-seq from Loucy (ENCSR648HLP) |
|
| Relations |
| BioSample |
SAMN06464314 |
| SRA |
SRX2636111 |
