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Sample GSM2534204 Query DataSets for GSM2534204
Status Public on Mar 12, 2017
Title ChIP-seq from neural progenitor cell (ENCLB187GJN)
Sample type SRA
 
Source name Homo sapiens neural progenitor in vitro differentiated cells female embryo (5 days) derived from H9
Organism Homo sapiens
Characteristics antibody: Control
cell_type: neural progenitor cell
biomaterial_type: in vitro differentiated cells
description: Frozen or fixed, in vitro differentiated neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia
biosample encode accession: ENCBS044KWE (SAMN04284273)
age: 5 day
donor_id: ENCDO222AAA
dev stage: embryonic
Sex: female
health state: healthy
lab: Richard Myers, HAIB
link: ENCBS044KWE at ENCODE; https://www.encodeproject.org/ENCBS044KWE/
link: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/
link: differentiation protocol; https://www.encodeproject.org/documents/c7707280-f681-4c88-9b16-9271082c8b32/@@download/attachment/SESCC_ENCODE_differentiation_SOPs_May30_2014.pdf
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR603SVD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR603SVD
assay title: ChIP-seq
encode release date: 2016-05-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB187GJN
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Mar 12, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE96261 ChIP-seq from neural progenitor cell (ENCSR603SVD)
Relations
BioSample SAMN04284273
SRA SRX2636103

Supplementary file Size Download File type/resource
GSM2534204_ENCLB187GJN_README.txt.gz 429 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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