GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM2534083 Query DataSets for GSM2534083
Status Public on Mar 12, 2017
Title ChIP-seq from hepatocyte (ENCLB798HDH)
Sample type SRA
Source name Homo sapiens hepatocyte in vitro differentiated cells female embryo (5 days) derived from H9
Organism Homo sapiens
Characteristics antibody: H3K27ac
cell_type: hepatocyte
biomaterial_type: in vitro differentiated cells
description: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia
biosample encode accession: ENCBS077RUJ (SAMN04284314)
age: 5 day
donor_id: ENCDO222AAA
dev stage: embryonic
Sex: female
health state: healthy
lab: Richard Myers, HAIB
link: ENCBS077RUJ at ENCODE;
link: Derived from ENCODE donor ENCDO222AAA;
link: differentiation protocol;
Extracted molecule genomic DNA
Extraction protocol general protocol:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
biological replicate number: 2
technical replicate number: 1
experiment encode accession: ENCSR507UDH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB798HDH
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
Submission date Mar 12, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE96201 ChIP-seq from hepatocyte (ENCSR507UDH)
BioSample SAMN04284314
SRA SRX2635974

Supplementary file Size Download File type/resource
GSM2534083_ENCFF138VYG_signal_p-value_GRCh38.bigWig 1.5 Gb (ftp)(http) BIGWIG
GSM2534083_ENCFF318WAI_fold_change_over_control_hg19.bigWig 1.5 Gb (ftp)(http) BIGWIG
GSM2534083_ENCFF463ULE_peaks_hg19.bigBed 7.1 Mb (ftp)(http) BIGBED
GSM2534083_ENCFF550GKA_signal_p-value_hg19.bigWig 1.6 Gb (ftp)(http) BIGWIG
GSM2534083_ENCFF594AIG_peaks_hg19.bed.gz 2.6 Mb (ftp)(http) BED
GSM2534083_ENCFF606YEX_fold_change_over_control_GRCh38.bigWig 1.5 Gb (ftp)(http) BIGWIG
GSM2534083_ENCFF795ASX_peaks_GRCh38.bigBed 7.2 Mb (ftp)(http) BIGBED
GSM2534083_ENCFF936KGY_peaks_GRCh38.bed.gz 2.6 Mb (ftp)(http) BED
GSM2534083_ENCLB798HDH_README.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap