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Sample GSM2534083

Query DataSets for GSM2534083

Status

Public on Mar 12, 2017

Title

ChIP-seq from hepatocyte (ENCLB798HDH)

Sample type

SRA

Source name

Homo sapiens hepatocyte in vitro differentiated cells female embryo (5 days) derived from H9

Organism

Homo sapiens

Characteristics

antibody: H3K27ac
cell_type: hepatocyte
biomaterial_type: in vitro differentiated cells
description: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia
biosample encode accession: ENCBS077RUJ (SAMN04284314)
age: 5 day
donor_id: ENCDO222AAA
dev stage: embryonic
Sex: female
health state: healthy
lab: Richard Myers, HAIB
link: ENCBS077RUJ at ENCODE; https://www.encodeproject.org/ENCBS077RUJ/
link: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/
link: differentiation protocol; https://www.encodeproject.org/documents/c7707280-f681-4c88-9b16-9271082c8b32/@@download/attachment/SESCC_ENCODE_differentiation_SOPs_May30_2014.pdf

Extracted molecule

genomic DNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2500

Description

https://www.encodeproject.org/experiments/ENCSR507UDH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR507UDH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB798HDH
size range: 200-600

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Mar 12, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL16791

Series (1)

GSE96201

ChIP-seq from hepatocyte (ENCSR507UDH)

Relations

BioSample

SAMN04284314

SRA

SRX2635974

Supplementary file	Size	Download	File type/resource
GSM2534083_ENCFF138VYG_signal_p-value_GRCh38.bigWig	1.5 Gb	(ftp)(http)	BIGWIG
GSM2534083_ENCFF318WAI_fold_change_over_control_hg19.bigWig	1.5 Gb	(ftp)(http)	BIGWIG
GSM2534083_ENCFF463ULE_peaks_hg19.bigBed	7.1 Mb	(ftp)(http)	BIGBED
GSM2534083_ENCFF550GKA_signal_p-value_hg19.bigWig	1.6 Gb	(ftp)(http)	BIGWIG
GSM2534083_ENCFF594AIG_peaks_hg19.bed.gz	2.6 Mb	(ftp)(http)	BED
GSM2534083_ENCFF606YEX_fold_change_over_control_GRCh38.bigWig	1.5 Gb	(ftp)(http)	BIGWIG
GSM2534083_ENCFF795ASX_peaks_GRCh38.bigBed	7.2 Mb	(ftp)(http)	BIGBED
GSM2534083_ENCFF936KGY_peaks_GRCh38.bed.gz	2.6 Mb	(ftp)(http)	BED
GSM2534083_ENCLB798HDH_README.txt.gz	1.7 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file