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Sample GSM2534038 Query DataSets for GSM2534038
Status Public on Mar 12, 2017
Title ChIP-seq from neural progenitor cell (ENCLB953HPX)
Sample type SRA
Source name Homo sapiens neural progenitor in vitro differentiated cells female embryo (5 days) derived from H9
Organism Homo sapiens
Characteristics antibody: H3K27ac
cell_type: neural progenitor cell
biomaterial_type: in vitro differentiated cells
description: Frozen or fixed, in vitro specified neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia
biosample encode accession: ENCBS018TPT (SAMN04284242)
age: 5 day
donor_id: ENCDO222AAA
dev stage: embryonic
Sex: female
health state: healthy
lab: Richard Myers, HAIB
link: ENCBS018TPT at ENCODE;
link: Derived from ENCODE donor ENCDO222AAA;
link: differentiation protocol;
Extracted molecule genomic DNA
Extraction protocol general protocol:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
biological replicate number: 2
technical replicate number: 1
experiment encode accession: ENCSR449AXO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-06-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB953HPX
size range: 200-600
nucleic acid starting quantity: 88.88
nucleic acid starting quantity units: ng
Data processing See GSM*_README.txt supplementary file linked below
Submission date Mar 12, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE96178 ChIP-seq from neural progenitor cell (ENCSR449AXO)
BioSample SAMN04284242
SRA SRX2635932

Supplementary file Size Download File type/resource
GSM2534038_ENCFF037CWU_peaks_GRCh38.bed.gz 1.3 Mb (ftp)(http) BED
GSM2534038_ENCFF101CZL_peaks_GRCh38.bigBed 3.1 Mb (ftp)(http) BIGBED
GSM2534038_ENCFF151CNW_signal_p-value_hg19.bigWig 1.6 Gb (ftp)(http) BIGWIG
GSM2534038_ENCFF202ZHO_fold_change_over_control_GRCh38.bigWig 1.5 Gb (ftp)(http) BIGWIG
GSM2534038_ENCFF311CAL_peaks_hg19.bed.gz 1.3 Mb (ftp)(http) BED
GSM2534038_ENCFF370SQP_peaks_hg19.bigBed 3.0 Mb (ftp)(http) BIGBED
GSM2534038_ENCFF813BDL_fold_change_over_control_hg19.bigWig 1.5 Gb (ftp)(http) BIGWIG
GSM2534038_ENCFF844FSG_signal_p-value_GRCh38.bigWig 1.5 Gb (ftp)(http) BIGWIG
GSM2534038_ENCLB953HPX_README.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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