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GEO accession:
Sample GSM2533917
Query DataSets for GSM2533917
Status
Public on Mar 12, 2017
Title
ChIP-seq from PC-3 (ENCLB936UNC)
Sample type
SRA
Source name
Homo sapiens PC-3 immortalized cell line
Organism
Homo sapiens
Characteristics
antibody: Control
line: PC-3
biomaterial_type: immortalized cell line
description: prostate cancer cell line
biosample encode accession: ENCBS451OVM (SAMN06464412)
dev stage: adult
Sex: male
age: 62 year
health state: grade IV, adenocarcinoma
passage number: 3
lab: Bradley Bernstein, Broad
link: ENCBS451OVM at ENCODE;
https://www.encodeproject.org/ENCBS451OVM/
link: Derived from ENCODE donor ENCDO349AAA;
https://www.encodeproject.org/ENCDO349AAA/
link: ENCODE dbxrefs Cellosaurus CVCL_0035;
http://web.expasy.org/cellosaurus/CVCL_0035
link: ATCC sample source;
http://www.atcc.org/products/all/CRL-1435.aspx
Extracted molecule
genomic DNA
Extraction protocol
extraction method: see document
general protocol:
https://www.encodeproject.org/documents/864ba3a4-4c71-4c58-bf07-b138977bf6c7/@@download/attachment/EpigenomicsMagBeadChIPv.1.2exp.pdf
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina HiSeq 2000
Description
https://www.encodeproject.org/experiments/ENCSR328AHC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR328AHC
assay title: ChIP-seq
encode release date: 2015-08-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB936UNC
size range: 300-600
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Mar 12, 2017
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL11154
Series (1)
GSE96117
ChIP-seq from PC-3 (ENCSR328AHC)
Relations
BioSample
SAMN06464412
SRA
SRX2635866
Supplementary file
Size
Download
File type/resource
GSM2533917_ENCLB936UNC_README.txt.gz
404 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file
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