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Sample GSM2533898 Query DataSets for GSM2533898
Status Public on Mar 12, 2017
Title ChIP-seq from SUDHL6 (ENCLB983FOR)
Sample type SRA
Source name Homo sapiens SUDHL6 immortalized cell line
Organism Homo sapiens
Characteristics antibody: H3K27ac
line: SUDHL6
biomaterial_type: immortalized cell line
description: also called SU-DHL-6 (diffuse histiocytic lymphoma) - disease: large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma; ATCC CRL-2959
biosample encode accession: ENCBS401ZBX (SAMN05733858)
age: 43 year
dev stage: adult
Sex: male
health state: large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma
lab: Bradley Bernstein, Broad
link: ENCBS401ZBX at ENCODE;
link: Derived from ENCODE donor ENCDO353AAA;
link: ENCODE dbxrefs Cellosaurus CVCL_2206;
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
general protocol:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
experiment encode accession: ENCSR307DQT
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR179YLS
encode release date: 2016-11-17
lab: Bradley Bernstein, Broad
library encode accession: ENCLB983FOR
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
Submission date Mar 12, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE96110 ChIP-seq from SUDHL6 (ENCSR307DQT)
BioSample SAMN05733858
SRA SRX2635831

Supplementary file Size Download File type/resource
GSM2533898_ENCFF101KAD_signal_p-value_GRCh38.bigWig 1.2 Gb (ftp)(http) BIGWIG
GSM2533898_ENCFF364VFV_signal_p-value_hg19.bigWig 1.1 Gb (ftp)(http) BIGWIG
GSM2533898_ENCFF395JVR_peaks_hg19.bigBed 2.6 Mb (ftp)(http) BIGBED
GSM2533898_ENCFF396DWL_peaks_hg19.bed.gz 1.0 Mb (ftp)(http) BED
GSM2533898_ENCFF424QBR_fold_change_over_control_GRCh38.bigWig 1.0 Gb (ftp)(http) BIGWIG
GSM2533898_ENCFF570BKX_peaks_GRCh38.bed.gz 983.8 Kb (ftp)(http) BED
GSM2533898_ENCFF616OWU_peaks_GRCh38.bigBed 2.4 Mb (ftp)(http) BIGBED
GSM2533898_ENCFF915GKB_fold_change_over_control_hg19.bigWig 1020.1 Mb (ftp)(http) BIGWIG
GSM2533898_ENCLB983FOR_README.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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