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Sample GSM2533898 Query DataSets for GSM2533898
Status Public on Mar 12, 2017
Title ChIP-seq from SUDHL6 (ENCLB983FOR)
Sample type SRA
 
Source name Homo sapiens SUDHL6 immortalized cell line
Organism Homo sapiens
Characteristics antibody: H3K27ac
line: SUDHL6
biomaterial_type: immortalized cell line
description: also called SU-DHL-6 (diffuse histiocytic lymphoma) - disease: large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma; ATCC CRL-2959
biosample encode accession: ENCBS401ZBX (SAMN05733858)
age: 43 year
dev stage: adult
Sex: male
health state: large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma
lab: Bradley Bernstein, Broad
link: ENCBS401ZBX at ENCODE; https://www.encodeproject.org/ENCBS401ZBX/
link: Derived from ENCODE donor ENCDO353AAA; https://www.encodeproject.org/ENCDO353AAA/
link: ENCODE dbxrefs Cellosaurus CVCL_2206; http://web.expasy.org/cellosaurus/CVCL_2206
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR307DQT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR307DQT
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR179YLS
encode release date: 2016-11-17
lab: Bradley Bernstein, Broad
library encode accession: ENCLB983FOR
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Mar 12, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE96110 ChIP-seq from SUDHL6 (ENCSR307DQT)
Relations
BioSample SAMN05733858
SRA SRX2635831

Supplementary file Size Download File type/resource
GSM2533898_ENCFF101KAD_signal_p-value_GRCh38.bigWig 1.2 Gb (ftp)(http) BIGWIG
GSM2533898_ENCFF364VFV_signal_p-value_hg19.bigWig 1.1 Gb (ftp)(http) BIGWIG
GSM2533898_ENCFF395JVR_peaks_hg19.bigBed 2.6 Mb (ftp)(http) BIGBED
GSM2533898_ENCFF396DWL_peaks_hg19.bed.gz 1.0 Mb (ftp)(http) BED
GSM2533898_ENCFF424QBR_fold_change_over_control_GRCh38.bigWig 1.0 Gb (ftp)(http) BIGWIG
GSM2533898_ENCFF570BKX_peaks_GRCh38.bed.gz 983.8 Kb (ftp)(http) BED
GSM2533898_ENCFF616OWU_peaks_GRCh38.bigBed 2.4 Mb (ftp)(http) BIGBED
GSM2533898_ENCFF915GKB_fold_change_over_control_hg19.bigWig 1020.1 Mb (ftp)(http) BIGWIG
GSM2533898_ENCLB983FOR_README.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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