NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2527637 Query DataSets for GSM2527637
Status Public on Mar 09, 2017
Title ChIP-seq from KOPT-K1 (ENCLB649EYM)
Sample type SRA
 
Source name Homo sapiens KOPT-K1 immortalized cell line
Organism Homo sapiens
Characteristics antibody: Control
line: KOPT-K1
biomaterial_type: immortalized cell line
description: cells from Birgit; a human T-ALL cell line with a chromosome translocation breakpoint at t(11;14)(p13;q11) affecting the putative oncoprotein
biosample encode accession: ENCBS345YKN (SAMN06464380)
dev stage: unknown
Sex: not collected
age: unknown
lab: Bradley Bernstein, Broad
link: ENCBS345YKN at ENCODE; https://www.encodeproject.org/ENCBS345YKN/
link: Derived from ENCODE donor ENCDO568LPD; https://www.encodeproject.org/ENCDO568LPD/
link: ENCODE dbxrefs Cellosaurus CVCL_4965; http://web.expasy.org/cellosaurus/CVCL_4965
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/97a73f1c-6372-4dd2-b275-0b8e855cbd5a/@@download/attachment/Cell_Paper_ChIP_protocol.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR255BOF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR255BOF
assay title: ChIP-seq
encode release date: 2015-08-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB649EYM
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Mar 09, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE96004 ChIP-seq from KOPT-K1 (ENCSR255BOF)
Relations
BioSample SAMN06464380
SRA SRX2630376

Supplementary file Size Download File type/resource
GSM2527637_ENCLB649EYM_README.txt.gz 429 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap