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GEO accession:
Sample GSM2527605
Query DataSets for GSM2527605
Status
Public on Mar 09, 2017
Title
ChIP-seq from smooth muscle cell (ENCLB891RKX)
Sample type
SRA
Source name
Homo sapiens smooth muscle in vitro differentiated cells female embryo (5 days) derived from H9
Organism
Homo sapiens
Characteristics
antibody: H3K27ac
cell_type: smooth muscle cell
biomaterial_type: in vitro differentiated cells
description: Frozen or fixed, in vitro differentiated smooth muscle cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia
biosample encode accession: ENCBS899TTJ (SAMN04284498)
age: 5 day
donor_id: ENCDO222AAA
dev stage: embryonic
Sex: female
health state: healthy
lab: Richard Myers, HAIB
link: ENCBS899TTJ at ENCODE;
https://www.encodeproject.org/ENCBS899TTJ/
link: Derived from ENCODE donor ENCDO222AAA;
https://www.encodeproject.org/ENCDO222AAA/
link: differentiation protocol;
https://www.encodeproject.org/documents/c7707280-f681-4c88-9b16-9271082c8b32/@@download/attachment/SESCC_ENCODE_differentiation_SOPs_May30_2014.pdf
Extracted molecule
genomic DNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina HiSeq 2500
Description
https://www.encodeproject.org/experiments/ENCSR210ZPC/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR210ZPC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR729MRJ
encode release date: 2016-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB891RKX
size range: 200-600
nucleic acid starting quantity: 60.06
nucleic acid starting quantity units: ng
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Mar 09, 2017
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL16791
Series (1)
GSE95986
ChIP-seq from smooth muscle cell (ENCSR210ZPC)
Relations
BioSample
SAMN04284498
SRA
SRX2630350
Supplementary file
Size
Download
File type/resource
GSM2527605_ENCLB891RKX_README.txt.gz
1.7 Kb
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
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