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Sample GSM2527494

Query DataSets for GSM2527494

Status

Public on Mar 09, 2017

Title

ChIP-seq from neural cell (ENCLB520XPR)

Sample type

SRA

Source name

Homo sapiens neural in vitro differentiated cells male embryo

Organism

Homo sapiens

Characteristics

antibody: H3K27ac
cell_type: neural cell
biomaterial_type: in vitro differentiated cells
biosample encode accession: ENCBS737HIZ (SAMN06464496)
dev stage: embryonic
Sex: male
donor_id: ENCDO000AAW
age: unknown
health state: healthy
passage number: 31
lab: Bradley Bernstein, Broad
link: ENCBS737HIZ at ENCODE; https://www.encodeproject.org/ENCBS737HIZ/
link: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/

Extracted molecule

genomic DNA

Extraction protocol

extraction method: see document
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2500

Description

https://www.encodeproject.org/experiments/ENCSR124VOE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR124VOE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB520XPR
size range: 200-600

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Mar 09, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL16791

Series (1)

GSE95935

ChIP-seq from neural cell (ENCSR124VOE)

Relations

BioSample

SAMN06464496

SRA

SRX2630239

Supplementary file	Size	Download	File type/resource
GSM2527494_ENCFF080PXG_fold_change_over_control_hg19.bigWig	1.6 Gb	(ftp)(http)	BIGWIG
GSM2527494_ENCFF119NGO_peaks_GRCh38.bed.gz	1.4 Mb	(ftp)(http)	BED
GSM2527494_ENCFF420XFR_peaks_hg19.bed.gz	1.4 Mb	(ftp)(http)	BED
GSM2527494_ENCFF543PES_fold_change_over_control_GRCh38.bigWig	1.6 Gb	(ftp)(http)	BIGWIG
GSM2527494_ENCFF667MRR_signal_p-value_GRCh38.bigWig	1.7 Gb	(ftp)(http)	BIGWIG
GSM2527494_ENCFF759XSO_peaks_hg19.bigBed	4.2 Mb	(ftp)(http)	BIGBED
GSM2527494_ENCFF847XZR_signal_p-value_hg19.bigWig	1.8 Gb	(ftp)(http)	BIGWIG
GSM2527494_ENCFF898FUU_peaks_GRCh38.bigBed	4.2 Mb	(ftp)(http)	BIGBED
GSM2527494_ENCLB520XPR_README.txt.gz	1.7 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record