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Sample GSM2527471 Query DataSets for GSM2527471
Status Public on Mar 09, 2017
Title ChIP-seq from hepatocyte (ENCLB565HMJ)
Sample type SRA
 
Source name Homo sapiens hepatocyte in vitro differentiated cells female embryo (5 days) derived from H9
Organism Homo sapiens
Characteristics antibody: Control
cell_type: hepatocyte
biomaterial_type: in vitro differentiated cells
description: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia
biosample encode accession: ENCBS077RUJ (SAMN04284314)
age: 5 day
donor_id: ENCDO222AAA
dev stage: embryonic
Sex: female
health state: healthy
lab: Richard Myers, HAIB
link: ENCBS077RUJ at ENCODE; https://www.encodeproject.org/ENCBS077RUJ/
link: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/
link: differentiation protocol; https://www.encodeproject.org/documents/c7707280-f681-4c88-9b16-9271082c8b32/@@download/attachment/SESCC_ENCODE_differentiation_SOPs_May30_2014.pdf
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR107PGG/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR107PGG
assay title: ChIP-seq
encode release date: 2016-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB565HMJ
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Mar 09, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE95924 ChIP-seq from hepatocyte (ENCSR107PGG)
Relations
BioSample SAMN04284314
SRA SRX2630212

Supplementary file Size Download File type/resource
GSM2527471_ENCLB565HMJ_README.txt.gz 430 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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