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Sample GSM2527388

Query DataSets for GSM2527388

Status

Public on Mar 09, 2017

Title

ChIP-seq from thoracic aorta (ENCLB015LAO)

Sample type

SRA

Source name

Homo sapiens thoracic aorta tissue male adult (37 years)

Organism

Homo sapiens

Characteristics

antibody: H3K27ac
tissue_type: thoracic aorta
biomaterial_type: tissue
description: EnTEX: Artery- Aorta
biosample encode accession: ENCBS543OJU (SAMN06464438)
dev stage: adult
Sex: male
donor_id: ENCDO845WKR
age: 37 year
lab: Bradley Bernstein, Broad
link: ENCBS543OJU at ENCODE; https://www.encodeproject.org/ENCBS543OJU/
link: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/

Extracted molecule

genomic DNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2500

Description

https://www.encodeproject.org/experiments/ENCSR015GFK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR015GFK
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR158PLZ
encode release date: 2016-11-15
lab: Bradley Bernstein, Broad
library encode accession: ENCLB015LAO
size range: 200-600
nucleic acid starting quantity: 12.32
nucleic acid starting quantity units: ng

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Mar 09, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL16791

Series (1)

GSE95884

ChIP-seq from thoracic aorta (ENCSR015GFK)

Relations

BioSample

SAMN06464438

SRA

SRX2630458

Supplementary file	Size	Download	File type/resource
GSM2527388_ENCFF003NBP_peaks_GRCh38.bed.gz	1.0 Mb	(ftp)(http)	BED
GSM2527388_ENCFF153RVE_signal_p-value_GRCh38.bigWig	642.0 Mb	(ftp)(http)	BIGWIG
GSM2527388_ENCFF242HEM_fold_change_over_control_hg19.bigWig	699.0 Mb	(ftp)(http)	BIGWIG
GSM2527388_ENCFF299GWT_peaks_hg19.bed.gz	1.0 Mb	(ftp)(http)	BED
GSM2527388_ENCFF457SSM_fold_change_over_control_GRCh38.bigWig	699.3 Mb	(ftp)(http)	BIGWIG
GSM2527388_ENCFF633AHJ_signal_p-value_hg19.bigWig	641.5 Mb	(ftp)(http)	BIGWIG
GSM2527388_ENCFF864XBD_peaks_hg19.bigBed	3.1 Mb	(ftp)(http)	BIGBED
GSM2527388_ENCFF896AQP_peaks_GRCh38.bigBed	3.1 Mb	(ftp)(http)	BIGBED
GSM2527388_ENCLB015LAO_README.txt.gz	1.7 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record