GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM2527386 Query DataSets for GSM2527386
Status Public on Mar 09, 2017
Title ChIP-seq from PC-9 (ENCLB539LMN)
Sample type SRA
Source name Homo sapiens PC-9 immortalized cell line
Organism Homo sapiens
Characteristics antibody: Control
line: PC-9
biomaterial_type: immortalized cell line
description: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding
biosample encode accession: ENCBS987JQH (SAMN06464582)
dev stage: unknown
Sex: not collected
age: unknown
lab: Bradley Bernstein, Broad
link: ENCBS987JQH at ENCODE;
link: Derived from ENCODE donor ENCDO647UHQ;
link: ENCODE dbxrefs Cellosaurus CVCL_B260;
Extracted molecule genomic DNA
Extraction protocol general protocol:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
experiment encode accession: ENCSR011GWK
assay title: ChIP-seq
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB539LMN
size range: 200-600
Data processing See GSM*_README.txt supplementary file linked below
Submission date Mar 09, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE95883 ChIP-seq from PC-9 (ENCSR011GWK)
BioSample SAMN06464582
SRA SRX2630460

Supplementary file Size Download File type/resource
GSM2527386_ENCLB539LMN_README.txt.gz 597 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap